Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   KCG52_RS01365 Genome accession   NZ_CP073114
Coordinates   290487..291035 (+) Length   182 a.a.
NCBI ID   WP_254344608.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0048     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 285487..296035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS01340 (KCG52_01320) - 285922..286503 (-) 582 WP_070850580.1 superoxide dismutase -
  KCG52_RS01345 (KCG52_01325) dnaB 286658..288064 (+) 1407 WP_036490624.1 replicative DNA helicase -
  KCG52_RS01350 (KCG52_01330) pilH 288224..288889 (+) 666 WP_070850582.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KCG52_RS01355 (KCG52_01335) pilV 288905..289570 (+) 666 WP_254344604.1 type IV pilus modification protein PilV -
  KCG52_RS01360 (KCG52_01340) pilJ 289573..290508 (+) 936 WP_254344606.1 pilus assembly protein PilW Machinery gene
  KCG52_RS01365 (KCG52_01345) pilK 290487..291035 (+) 549 WP_254344608.1 pilus assembly protein Machinery gene
  KCG52_RS01370 (KCG52_01350) pilL 291040..291528 (+) 489 WP_070850586.1 PilX family type IV pilin Machinery gene
  KCG52_RS01375 (KCG52_01355) - 291579..292199 (-) 621 WP_036490614.1 Smr/MutS family protein -
  KCG52_RS01380 (KCG52_01360) - 292335..292712 (+) 378 WP_254344610.1 hypothetical protein -
  KCG52_RS01385 (KCG52_01365) trpE 292847..294322 (+) 1476 WP_254344612.1 anthranilate synthase component I -
  KCG52_RS01390 (KCG52_01370) - 294383..295216 (+) 834 WP_254344613.1 abortive infection system antitoxin AbiGi family protein -
  KCG52_RS01395 (KCG52_01375) - 295361..295930 (+) 570 WP_254344615.1 RNA 2'-phosphotransferase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20413.23 Da        Isoelectric Point: 8.4471

>NTDB_id=557979 KCG52_RS01365 WP_254344608.1 290487..291035(+) (pilK) [Neisseria subflava strain HP0048]
MRRPITLIKPDRQQGYALFIVLMMMVVIALLVVTATQSYNTEQRISTNDADRKLATTLAEAALREGENQIFDIEGKKTNF
TKECKDGFCATPNVKSDSEAIEETATEDAWKRKCDKNQNLCIDTNGKEYSLGKNSGIAKNPRYIIEYLGKTTEGRITYRV
TAKAWGKNANTQVVLQSYVASE

Nucleotide


Download         Length: 549 bp        

>NTDB_id=557979 KCG52_RS01365 WP_254344608.1 290487..291035(+) (pilK) [Neisseria subflava strain HP0048]
ATGCGCCGACCGATCACTCTAATCAAACCCGACCGGCAGCAGGGCTATGCTTTATTTATCGTTTTAATGATGATGGTCGT
CATCGCCCTGCTCGTGGTTACAGCCACCCAGTCCTACAATACCGAACAGCGTATCAGCACCAACGATGCCGACCGCAAAC
TGGCAACCACCTTGGCCGAAGCCGCATTGCGTGAAGGTGAAAATCAAATTTTTGATATTGAAGGGAAAAAGACTAATTTT
ACCAAAGAGTGTAAAGATGGTTTTTGCGCCACACCTAACGTGAAATCTGACAGCGAAGCCATCGAAGAAACCGCTACTGA
AGATGCCTGGAAAAGAAAATGTGATAAAAATCAAAATCTTTGCATCGATACCAACGGTAAAGAATACTCCCTAGGTAAGA
ATAGCGGCATCGCAAAAAATCCACGCTACATTATCGAATATTTAGGTAAAACTACTGAGGGTCGAATTACCTACCGCGTT
ACCGCCAAAGCATGGGGTAAAAATGCCAATACCCAAGTCGTCCTTCAGTCTTACGTTGCCAGCGAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(14-64)

Type IV pilus assembly protein PilX C-term (PilX)

(87-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

53.731

100

0.593