Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   KCG52_RS01350 Genome accession   NZ_CP073114
Coordinates   288224..288889 (+) Length   221 a.a.
NCBI ID   WP_070850582.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0048     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 283224..293889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS01330 (KCG52_01310) - 283249..284094 (+) 846 WP_036490627.1 DUF817 domain-containing protein -
  KCG52_RS01335 (KCG52_01315) - 284155..285696 (-) 1542 WP_036490625.1 OFA family MFS transporter -
  KCG52_RS01340 (KCG52_01320) - 285922..286503 (-) 582 WP_070850580.1 superoxide dismutase -
  KCG52_RS01345 (KCG52_01325) dnaB 286658..288064 (+) 1407 WP_036490624.1 replicative DNA helicase -
  KCG52_RS01350 (KCG52_01330) pilH 288224..288889 (+) 666 WP_070850582.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KCG52_RS01355 (KCG52_01335) pilV 288905..289570 (+) 666 WP_254344604.1 type IV pilus modification protein PilV -
  KCG52_RS01360 (KCG52_01340) pilJ 289573..290508 (+) 936 WP_254344606.1 pilus assembly protein PilW Machinery gene
  KCG52_RS01365 (KCG52_01345) pilK 290487..291035 (+) 549 WP_254344608.1 pilus assembly protein Machinery gene
  KCG52_RS01370 (KCG52_01350) pilL 291040..291528 (+) 489 WP_070850586.1 PilX family type IV pilin Machinery gene
  KCG52_RS01375 (KCG52_01355) - 291579..292199 (-) 621 WP_036490614.1 Smr/MutS family protein -
  KCG52_RS01380 (KCG52_01360) - 292335..292712 (+) 378 WP_254344610.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24382.57 Da        Isoelectric Point: 8.4439

>NTDB_id=557977 KCG52_RS01350 WP_070850582.1 288224..288889(+) (pilH) [Neisseria subflava strain HP0048]
MYQTQKGFTLIELLIVITIAAVMAVIAFPNMNQWIASRRAASQAEQIANLLRFARNEAVRLNLPVYICPVKIKSDGSPNN
GCDSKYAGNGMLAYADKNGDSNYKNDTVDLSVRSIILNGDTDKVEYSFNYIPIGNDRSALSTSASKEVWWRFLPNGTFGH
STDGKNYQFSDGHIKISLTDKSAADAETKKARATVLLINGNGHVEICAKNDERKICEYSSK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=557977 KCG52_RS01350 WP_070850582.1 288224..288889(+) (pilH) [Neisseria subflava strain HP0048]
ATGTATCAGACACAAAAAGGCTTCACCCTAATTGAGTTGCTGATCGTCATTACTATTGCAGCAGTAATGGCCGTCATCGC
ATTCCCAAATATGAATCAATGGATTGCCTCCAGACGTGCGGCATCGCAAGCAGAGCAAATTGCCAACCTGCTGCGTTTCG
CGCGAAATGAGGCCGTCCGTCTCAATCTTCCCGTTTACATTTGCCCGGTCAAAATTAAATCCGATGGCTCGCCCAATAAT
GGTTGCGATTCCAAATATGCCGGTAATGGTATGTTGGCTTACGCTGATAAAAACGGAGATTCCAACTATAAAAACGATAC
AGTCGATTTATCCGTCCGCTCCATTATCCTTAATGGGGATACCGACAAAGTGGAATACAGCTTCAACTATATCCCTATCG
GCAATGACCGTTCCGCCCTCTCGACCTCAGCTTCAAAAGAAGTCTGGTGGAGATTCCTGCCCAATGGTACATTTGGCCAT
TCAACTGATGGCAAGAATTATCAATTTTCAGACGGCCACATCAAAATCAGCCTGACGGATAAATCCGCCGCCGATGCTGA
AACCAAGAAAGCCCGTGCTACCGTACTTTTGATCAATGGCAATGGGCATGTCGAAATCTGTGCTAAAAACGATGAGCGCA
AAATATGCGAATACTCTTCCAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Type II transport protein GspH (GspH)

(43-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

54.709

100

0.552