Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KB235_RS01610 Genome accession   NZ_CP073101
Coordinates   310521..311030 (-) Length   169 a.a.
NCBI ID   WP_034806221.1    Uniprot ID   -
Organism   Exiguobacterium alkaliphilum strain B-3531D     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 305521..316030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KB235_RS01590 (KB235_01590) dnaB 306305..307657 (-) 1353 WP_034806231.1 replicative DNA helicase -
  KB235_RS01595 (KB235_01595) rplI 307675..308118 (-) 444 WP_034806227.1 50S ribosomal protein L9 -
  KB235_RS01600 (KB235_01600) - 308115..310103 (-) 1989 WP_211780228.1 DHH family phosphoesterase -
  KB235_RS01605 (KB235_01605) rpsR 310244..310474 (-) 231 WP_015880232.1 30S ribosomal protein S18 -
  KB235_RS01610 (KB235_01610) ssbA 310521..311030 (-) 510 WP_034806221.1 single-stranded DNA-binding protein Machinery gene
  KB235_RS01615 (KB235_01615) rpsF 311068..311355 (-) 288 WP_034806218.1 30S ribosomal protein S6 -
  KB235_RS01620 (KB235_01620) ychF 311486..312586 (-) 1101 WP_211780229.1 redox-regulated ATPase YchF -
  KB235_RS01625 (KB235_01625) - 312739..312942 (-) 204 WP_211780230.1 DUF951 domain-containing protein -
  KB235_RS01630 (KB235_01630) - 312932..313873 (-) 942 WP_051690335.1 mechanosensitive ion channel family protein -
  KB235_RS01635 (KB235_01635) yyaC 314045..314671 (+) 627 WP_034817041.1 spore protease YyaC -
  KB235_RS01640 (KB235_01640) - 314644..315426 (-) 783 WP_211780231.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18126.92 Da        Isoelectric Point: 4.9986

>NTDB_id=557907 KB235_RS01610 WP_034806221.1 310521..311030(-) (ssbA) [Exiguobacterium alkaliphilum strain B-3531D]
MINRVVLVGRLTRDPEMRYTQSGIAVTRFTLACDRPFTGQDGKREADFIDCVVWRKQAENVAQYLKKGSMAGVDGRLQIS
SYEGQDGQRRYRAEVVADSVRFLEPRGASGQRDTAPAGDVFGGGESSGSGWGAAASSTSSQSSNSNKGFDADPFSGGGKI
DLSDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=557907 KB235_RS01610 WP_034806221.1 310521..311030(-) (ssbA) [Exiguobacterium alkaliphilum strain B-3531D]
ATGATTAACCGAGTTGTGTTAGTTGGTCGATTGACACGCGATCCAGAAATGCGTTACACGCAGAGCGGCATCGCCGTAAC
TCGCTTTACTCTCGCTTGCGATCGTCCATTCACTGGACAAGATGGGAAGCGTGAGGCGGACTTCATTGATTGTGTCGTAT
GGCGCAAACAGGCAGAGAACGTGGCACAATATTTGAAAAAAGGCAGCATGGCCGGCGTAGACGGTCGCCTTCAAATCAGT
AGTTACGAAGGTCAAGATGGCCAACGTCGTTACCGGGCAGAAGTCGTAGCCGATAGCGTACGCTTCCTTGAACCACGCGG
GGCCTCAGGGCAACGTGATACAGCACCGGCTGGAGATGTCTTCGGTGGTGGTGAGTCAAGTGGGTCAGGATGGGGCGCAG
CCGCTTCTTCGACTTCATCTCAGTCCTCGAACTCAAACAAAGGTTTTGACGCCGACCCGTTCTCGGGCGGAGGCAAAATC
GACTTATCGGATGACGATCTACCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.107

100

0.556
  ssb Latilactobacillus sakei subsp. sakei 23K

52.353

100

0.527
  ssb Glaesserella parasuis strain SC1401

32.105

100

0.361