Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   INT76_RS08410 Genome accession   NZ_CP073084
Coordinates   1655749..1656243 (+) Length   164 a.a.
NCBI ID   WP_212570001.1    Uniprot ID   -
Organism   Streptococcus oriscaviae strain HKU75     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1650749..1661243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INT76_RS08380 (INT76_08380) - 1651275..1652249 (-) 975 WP_212569996.1 aromatic acid exporter family protein -
  INT76_RS08385 (INT76_08385) - 1652350..1652739 (-) 390 WP_212569997.1 DUF1761 domain-containing protein -
  INT76_RS08390 (INT76_08390) rpmB 1652988..1653176 (+) 189 WP_001140948.1 50S ribosomal protein L28 -
  INT76_RS08395 (INT76_08395) - 1653285..1653650 (+) 366 WP_212569998.1 Asp23/Gls24 family envelope stress response protein -
  INT76_RS08400 (INT76_08400) - 1653653..1655317 (+) 1665 WP_212569999.1 DAK2 domain-containing protein -
  INT76_RS08405 (INT76_08405) rpsF 1655447..1655737 (+) 291 WP_212570000.1 30S ribosomal protein S6 -
  INT76_RS08410 (INT76_08410) ssbA 1655749..1656243 (+) 495 WP_212570001.1 single-stranded DNA-binding protein Machinery gene
  INT76_RS08415 (INT76_08415) rpsR 1656276..1656515 (+) 240 WP_002939250.1 30S ribosomal protein S18 -
  INT76_RS08420 (INT76_08420) - 1656666..1657367 (-) 702 WP_212570002.1 hypothetical protein -
  INT76_RS08425 (INT76_08425) - 1657433..1658086 (-) 654 WP_212570003.1 DUF1129 domain-containing protein -
  INT76_RS08430 (INT76_08430) - 1658102..1659046 (-) 945 WP_212570004.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18088.88 Da        Isoelectric Point: 4.7400

>NTDB_id=557863 INT76_RS08410 WP_212570001.1 1655749..1656243(+) (ssbA) [Streptococcus oriscaviae strain HKU75]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVAENFQLLESRTAREGQAGGYGAGNSFAGGNDYGSSYQAPAQSTPNFAREESPFGATNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=557863 INT76_RS08410 WP_212570001.1 1655749..1656243(+) (ssbA) [Streptococcus oriscaviae strain HKU75]
ATGATAAATAATGTGGTACTAGTGGGTCGTATGACTCGTGATGCAGAACTTCGTTACACTCCGTCAAACCAAGCTGTTGC
GACATTTACACTTGCGGTTAACCGCAATTTTAAAAATCAAAGCGGCGAGCGTGAAGCGGACTTTATCAACGTGGTAATTT
GGCGCCAACAGGCTGAAAACTTGGCAAACTGGGCTAAAAAGGGAGCCTTGATTGGAATTACAGGTCGCATCCAGACCCGT
AACTATGAAAACCAACAGGGACAGCGTGTGTATGTAACAGAAGTCGTTGCAGAAAATTTCCAACTCTTGGAAAGCCGTAC
TGCAAGAGAAGGGCAAGCTGGAGGATACGGAGCTGGCAATTCATTTGCTGGCGGGAACGACTATGGTTCATCCTACCAAG
CACCTGCACAGTCTACACCAAACTTTGCTCGAGAAGAAAGTCCGTTTGGAGCAACCAATCCAATGGACATTTCAGATGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.721

100

0.616
  ssb Latilactobacillus sakei subsp. sakei 23K

58.48

100

0.61
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366