Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   INT76_RS04975 Genome accession   NZ_CP073084
Coordinates   986431..987477 (-) Length   348 a.a.
NCBI ID   WP_212572803.1    Uniprot ID   -
Organism   Streptococcus oriscaviae strain HKU75     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 981431..992477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INT76_RS04945 (INT76_04945) - 982478..982759 (-) 282 WP_249116196.1 YlxQ-related RNA-binding protein -
  INT76_RS04950 (INT76_04950) - 982773..983069 (-) 297 WP_212572794.1 YlxR family protein -
  INT76_RS04955 (INT76_04955) nusA 983088..984233 (-) 1146 WP_212572796.1 transcription termination factor NusA -
  INT76_RS04960 (INT76_04960) rimP 984269..984739 (-) 471 WP_212572798.1 ribosome maturation factor RimP -
  INT76_RS04965 (INT76_04965) trmB 984952..985590 (-) 639 WP_212572800.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  INT76_RS04970 (INT76_04970) - 985587..986381 (-) 795 WP_212572802.1 phosphotransferase family protein -
  INT76_RS04975 (INT76_04975) pptB 986431..987477 (-) 1047 WP_212572803.1 ABC transporter permease Regulator
  INT76_RS04980 (INT76_04980) pptA 987474..988208 (-) 735 WP_212572805.1 ABC transporter ATP-binding protein Regulator
  INT76_RS04985 (INT76_04985) - 988271..988684 (+) 414 WP_212572807.1 HIT family protein -
  INT76_RS04990 (INT76_04990) - 988686..988991 (+) 306 WP_212572809.1 chemotaxis protein -
  INT76_RS04995 (INT76_04995) - 989005..990147 (-) 1143 WP_212572811.1 LCP family protein -
  INT76_RS05000 (INT76_05000) - 990144..990671 (-) 528 WP_212572812.1 GNAT family N-acetyltransferase -
  INT76_RS05005 (INT76_05005) tsaE 990664..991104 (-) 441 WP_212572820.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 39970.88 Da        Isoelectric Point: 10.2787

>NTDB_id=557838 INT76_RS04975 WP_212572803.1 986431..987477(-) (pptB) [Streptococcus oriscaviae strain HKU75]
MKQIFQERRQVFLGSCLRYLRYVLNDHFVLVLLVLLGFVSLQYQQLLQHFPAQPWAVYLLLLVATSLLFFTGRIATYLEP
ADQVFLLAQEGVVLAWLKAASLRSFLIWGGFQLAGQLILLPLYLRLGLPLWGFIGLNLVLLVGKWFVFQQQVTTYLRDGK
LDWDKAIAAESRRQQSILQFFSLFTKVKGITSGIKPRPYLNGLLNLVKKSPATTWDYLYVRAFVRSGDFFALTLRLLCLS
LVSMLLVERSWLAVGLSLLFHYLLLFQLLTLFRVYNYQYLAGLYPLSSAQKLQGFKRVLRGLLYGLLALELVVGFLVLEE
KMSLLALVGFGFLLNQFYLDIKSKKLID

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=557838 INT76_RS04975 WP_212572803.1 986431..987477(-) (pptB) [Streptococcus oriscaviae strain HKU75]
ATGAAGCAAATCTTTCAGGAACGACGGCAGGTCTTTTTAGGGTCGTGTCTGCGTTATCTCCGCTATGTGTTAAACGATCA
CTTTGTCTTGGTTTTGTTGGTCCTGTTGGGGTTTGTATCCTTGCAATATCAGCAGCTCCTGCAACATTTTCCTGCCCAGC
CTTGGGCAGTTTACCTCTTGCTTCTGGTAGCTACTAGTCTGCTTTTTTTCACAGGAAGAATTGCGACCTATTTGGAGCCT
GCTGACCAAGTGTTTTTGTTGGCTCAAGAAGGCGTGGTGTTAGCTTGGTTAAAAGCGGCTTCTTTGCGCTCCTTTCTTAT
CTGGGGTGGCTTTCAACTGGCGGGTCAGCTGATTCTGCTTCCTCTTTATTTGAGGTTGGGTCTGCCCTTGTGGGGATTCA
TAGGCCTTAATCTGGTGTTGCTGGTTGGCAAGTGGTTCGTTTTTCAGCAGCAAGTGACAACTTATCTGCGGGATGGGAAG
TTGGATTGGGATAAGGCTATTGCGGCAGAGAGTCGCAGGCAGCAGTCCATCCTACAATTCTTCTCTCTCTTTACCAAGGT
CAAGGGAATTACGAGCGGTATCAAGCCAAGACCTTATCTAAATGGTCTGCTTAATCTGGTCAAAAAGAGTCCTGCGACCA
CTTGGGATTACCTCTATGTGCGAGCTTTTGTGCGGTCGGGAGATTTTTTTGCTTTGACCCTGCGCTTGCTCTGTCTTAGT
CTTGTAAGTATGCTCCTTGTCGAAAGGAGCTGGTTGGCAGTTGGCCTGTCCCTTCTTTTTCACTACCTTCTGCTCTTTCA
GCTCTTAACCCTTTTTCGAGTGTATAATTATCAGTATTTGGCAGGGCTTTATCCTTTGTCTTCAGCTCAAAAATTGCAGG
GCTTTAAACGGGTTCTGAGGGGGCTGCTCTATGGACTCCTTGCCTTAGAACTTGTGGTTGGTTTCTTGGTTCTAGAGGAA
AAAATGAGCCTATTAGCCCTAGTTGGTTTTGGGTTCTTGCTCAATCAATTTTACTTGGATATAAAATCAAAGAAATTGAT
TGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

48.276

100

0.483

  pptB Streptococcus thermophilus LMD-9

46.839

100

0.468