Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   L1P12_RS06200 Genome accession   NZ_CP091026
Coordinates   1278370..1279107 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain STEC383     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1273370..1284107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1P12_RS06170 yfiL 1273528..1273893 (-) 366 WP_059329068.1 DUF2799 domain-containing protein -
  L1P12_RS06175 aroF 1274103..1275173 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  L1P12_RS06180 tyrA 1275184..1276305 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  L1P12_RS06185 pheA 1276348..1277508 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  L1P12_RS06190 pheL 1277607..1277654 (-) 48 WP_010723158.1 phe operon leader peptide -
  L1P12_RS06195 raiA 1277758..1278099 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  L1P12_RS06200 comL 1278370..1279107 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  L1P12_RS06205 rluD 1279242..1280222 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  L1P12_RS06210 yfiH 1280219..1280950 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  L1P12_RS06215 clpC 1281080..1283653 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=557700 L1P12_RS06200 WP_000197686.1 1278370..1279107(-) (comL) [Escherichia coli strain STEC383]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=557700 L1P12_RS06200 WP_000197686.1 1278370..1279107(-) (comL) [Escherichia coli strain STEC383]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376