Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   J8N07_RS11405 Genome accession   NZ_CP073074
Coordinates   2539542..2540195 (+) Length   217 a.a.
NCBI ID   WP_229049237.1    Uniprot ID   -
Organism   Chryseobacterium arthrosphaerae strain LMY     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2534542..2545195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8N07_RS11390 (J8N07_11390) aceA 2534862..2536142 (-) 1281 WP_123843292.1 isocitrate lyase -
  J8N07_RS11395 (J8N07_11395) aceB 2536233..2537807 (-) 1575 WP_229049235.1 malate synthase A -
  J8N07_RS11400 (J8N07_11400) - 2537934..2539409 (+) 1476 WP_229049236.1 helix-turn-helix domain-containing protein -
  J8N07_RS11405 (J8N07_11405) comF 2539542..2540195 (+) 654 WP_229049237.1 ComF family protein Machinery gene
  J8N07_RS11410 (J8N07_11410) - 2540307..2540993 (+) 687 WP_229049238.1 alpha/beta fold hydrolase -
  J8N07_RS11415 (J8N07_11415) upp 2540995..2541645 (-) 651 WP_065399113.1 uracil phosphoribosyltransferase -
  J8N07_RS11420 (J8N07_11420) der 2541802..2543112 (-) 1311 WP_065399114.1 ribosome biogenesis GTPase Der -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25325.21 Da        Isoelectric Point: 6.8206

>NTDB_id=557701 J8N07_RS11405 WP_229049237.1 2539542..2540195(+) (comF) [Chryseobacterium arthrosphaerae strain LMY]
MILDLLFPNRCIECNRIIDPDLLVCDLCFSQINFTHYAYSEHNPIKERCSLFFPIEHTFALMQFEEESLSRKIIHELKYR
NREITGKVLADWTTERLDFKNEKPDLMVSIPLHPKKLRERGYNQLHVFTEALSAFYTIPFDHELLRRNHYAKAQALKDKK
HRLETVNTFSVTQPVTGKHILLIDDVFTTGNTISSVAWEILNSGDNKVSVLVMAMDV

Nucleotide


Download         Length: 654 bp        

>NTDB_id=557701 J8N07_RS11405 WP_229049237.1 2539542..2540195(+) (comF) [Chryseobacterium arthrosphaerae strain LMY]
ATGATACTAGACCTGCTTTTCCCCAACCGCTGCATTGAATGCAACAGAATCATCGATCCTGATCTTCTGGTATGTGATCT
CTGTTTCAGTCAGATCAATTTCACCCATTATGCCTATTCCGAGCATAATCCGATTAAAGAAAGGTGCAGTCTGTTTTTTC
CTATTGAACATACTTTTGCATTAATGCAGTTTGAAGAAGAAAGCCTGAGCCGGAAGATTATTCACGAACTGAAATACAGG
AACAGAGAAATAACCGGAAAGGTCCTGGCAGACTGGACCACTGAACGGCTTGATTTTAAAAATGAAAAGCCGGATCTTAT
GGTAAGTATTCCACTTCATCCTAAGAAGCTAAGGGAAAGAGGATATAATCAGCTTCATGTATTTACCGAGGCATTGTCGG
CATTTTATACCATTCCTTTTGATCATGAGCTGCTCAGAAGAAATCATTACGCCAAAGCACAGGCTTTAAAAGATAAGAAA
CACAGACTGGAAACGGTCAACACATTTTCCGTGACACAACCTGTCACCGGAAAACATATTCTGCTGATTGACGATGTTTT
TACCACAGGAAATACAATATCCTCTGTTGCATGGGAGATCCTGAATTCCGGAGATAATAAAGTGAGCGTTCTGGTGATGG
CCATGGATGTGTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

51.389

99.539

0.512