Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   KBU60_RS10500 Genome accession   NZ_CP073068
Coordinates   2261549..2263807 (-) Length   752 a.a.
NCBI ID   WP_140287661.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FB-11     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2256549..2268807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBU60_RS10480 (KBU60_10480) kdsB 2257841..2258596 (-) 756 WP_025540306.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KBU60_RS10485 (KBU60_10485) - 2258596..2258775 (-) 180 WP_005378451.1 Trm112 family protein -
  KBU60_RS10490 (KBU60_10490) lpxK 2258756..2259763 (-) 1008 WP_065788057.1 tetraacyldisaccharide 4'-kinase -
  KBU60_RS10495 (KBU60_10495) msbA 2259769..2261517 (-) 1749 WP_015296464.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  KBU60_RS10500 (KBU60_10500) comEC 2261549..2263807 (-) 2259 WP_140287661.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KBU60_RS10505 (KBU60_10505) - 2263816..2264325 (+) 510 WP_005456245.1 DUF2062 domain-containing protein -
  KBU60_RS10510 (KBU60_10510) lolE 2264532..2265776 (-) 1245 WP_025503705.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  KBU60_RS10515 (KBU60_10515) lolD 2265779..2266486 (-) 708 WP_020840312.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  KBU60_RS10520 (KBU60_10520) lolC 2266479..2267687 (-) 1209 WP_029785989.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  KBU60_RS10525 (KBU60_10525) - 2267952..2268521 (+) 570 WP_140287662.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84808.34 Da        Isoelectric Point: 9.5186

>NTDB_id=557661 KBU60_RS10500 WP_140287661.1 2261549..2263807(-) (comEC) [Vibrio parahaemolyticus strain FB-11]
MTLLEKSWTLALFVASVISSAWWPTMPDWRWLLLGIITTGSIIKLRRGLISIGVIVGFMVVIVHGNIMEYQRQALFQAGE
NSTIIGRVDSSFTQISHGYEGVVAIKQVNSHTLLPFLKPKVRLITPFPLAVNSEFTTNVLIKPIIGLRNEAGFDAEKQSM
GSGVVARAVVTKDSHWVIRTSSSWRESIIQTVERDISRLEHFALIKALAFADRTGLTKEDWQFLRDSGLLHLVSISGLHI
GMALTFGLALGGLIRLAMPRYWFLPSVSGLAFAIVYAWLADFSLPTTRAVSVCIIYIALKYWLVHWSPWRVLLLAVALQL
FFQPFASFSLSFWLSYLSVGAVLFAVNTVQDSKEGRLGKLRILLLTQLILSLLIVPISGYFFSGFSWSSLVYNLVFIPWF
GFVVVPIMFAALIASLLFPMLATVLWYLLDIFLVPLSWSVRYAIGTWQPISAEWTFVIVVVSAVLVLRHVMPRYVWMFVC
VIVVMTGLFPKQDNQTWRIDVLDVGHGLAVLVEKEGRVLLYDTGKAWQNGSIAEQVITPVLHRRGYSSVDTMILSHADND
HAGGRKVIEQYFSPKHKLSSQSFLHYQPCIAAEKWKWQGLHMEVLWPPKPVVRAYNPHSCVISLEDPSTGFKMLFTGDIE
AISEWILLREPEKLRSDVMLVPHHGSKSSSNPKFINVVEPSLAIASTAKLNQWGMPAPEVVQTYTDSGVSWLDTGSDGQI
TILLDGNNWRFESKRRETIEPWYRQMLRNRVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=557661 KBU60_RS10500 WP_140287661.1 2261549..2263807(-) (comEC) [Vibrio parahaemolyticus strain FB-11]
ATGACTCTCTTAGAAAAAAGTTGGACCTTGGCGTTATTTGTCGCGAGCGTAATTTCGTCTGCATGGTGGCCGACGATGCC
GGATTGGCGTTGGTTGCTGCTGGGAATAATTACCACTGGCTCAATAATTAAATTACGTCGAGGCTTAATTAGCATAGGCG
TAATTGTGGGCTTTATGGTTGTCATCGTTCACGGCAATATTATGGAGTATCAGAGACAAGCCCTTTTTCAAGCAGGTGAG
AATAGTACCATAATTGGTAGAGTTGACAGCTCTTTTACGCAAATAAGTCATGGATATGAAGGTGTCGTAGCGATAAAACA
AGTGAATTCTCACACTCTGTTACCTTTTCTTAAACCTAAAGTCCGCCTTATAACGCCCTTCCCACTAGCTGTTAACAGTG
AGTTTACGACTAACGTTTTGATTAAGCCCATTATCGGCCTCAGAAATGAAGCGGGTTTCGACGCAGAAAAGCAATCAATG
GGAAGTGGTGTTGTTGCAAGAGCGGTCGTAACTAAAGATTCACACTGGGTCATTCGTACTTCTTCGTCTTGGCGCGAGTC
GATTATTCAAACTGTTGAGCGTGATATTTCTCGCCTTGAGCACTTTGCTCTAATTAAAGCACTGGCTTTTGCTGATCGCA
CTGGGCTTACCAAAGAGGATTGGCAGTTTCTGCGTGACAGCGGATTACTGCATCTTGTATCGATTTCTGGTTTACACATT
GGGATGGCATTGACGTTTGGGCTCGCCCTTGGTGGGCTTATTCGGCTTGCTATGCCGCGATATTGGTTTCTACCATCAGT
GAGTGGGTTGGCGTTTGCCATTGTTTACGCTTGGCTTGCTGATTTTTCTTTGCCGACGACCCGAGCCGTTTCTGTTTGTA
TCATCTATATTGCTTTGAAGTATTGGCTTGTTCATTGGAGTCCATGGCGCGTACTGTTATTGGCTGTGGCGTTGCAACTT
TTCTTCCAACCTTTTGCTTCTTTTAGTTTGAGTTTTTGGCTGTCTTATTTATCCGTTGGTGCCGTTTTGTTTGCGGTTAA
CACAGTGCAAGACTCGAAGGAAGGTCGTTTGGGAAAGTTGCGGATACTTCTGTTGACTCAACTGATACTGAGCTTATTGA
TTGTCCCGATCAGTGGCTATTTTTTCTCTGGATTTAGCTGGTCTTCTTTAGTCTACAATTTGGTTTTCATTCCTTGGTTT
GGCTTTGTTGTCGTTCCAATCATGTTTGCTGCTTTAATTGCGTCATTGCTCTTTCCTATGTTGGCGACGGTTCTATGGTA
TTTGCTTGACATATTTCTGGTGCCACTAAGTTGGTCGGTTCGATATGCCATAGGGACTTGGCAACCTATTAGTGCCGAGT
GGACATTTGTTATTGTTGTAGTGAGTGCAGTGCTCGTTTTAAGACATGTTATGCCTCGTTACGTTTGGATGTTTGTCTGT
GTAATTGTTGTGATGACTGGGTTGTTTCCTAAGCAAGATAACCAAACTTGGCGTATTGATGTGCTTGATGTCGGGCATGG
GTTGGCGGTACTGGTTGAAAAAGAGGGTAGAGTTTTACTTTATGATACGGGCAAGGCTTGGCAAAACGGCAGTATAGCTG
AGCAAGTGATTACGCCAGTACTGCACCGCAGAGGTTACTCAAGTGTCGATACGATGATTTTAAGTCATGCCGATAATGAC
CATGCTGGCGGCCGAAAAGTGATAGAACAGTACTTTTCACCTAAACACAAACTAAGCAGCCAGAGCTTTTTACATTATCA
GCCTTGTATTGCTGCTGAGAAATGGAAGTGGCAAGGGTTGCACATGGAGGTACTTTGGCCTCCTAAACCTGTTGTACGTG
CATACAACCCCCACTCTTGTGTCATCAGTCTGGAAGACCCTAGTACAGGTTTTAAAATGTTGTTTACTGGTGATATCGAA
GCCATCAGCGAATGGATACTGCTTCGAGAGCCAGAAAAGCTGCGCAGTGATGTAATGCTAGTGCCGCATCATGGAAGCAA
AAGCTCTTCTAACCCTAAGTTTATCAATGTTGTTGAGCCTAGCTTGGCTATTGCTTCAACGGCAAAACTAAACCAGTGGG
GAATGCCCGCACCTGAAGTCGTTCAGACCTATACCGATAGTGGTGTTAGTTGGTTAGACACTGGAAGTGATGGCCAAATA
ACAATCTTACTTGATGGCAATAACTGGCGTTTTGAAAGTAAACGTCGTGAGACAATTGAGCCTTGGTATAGGCAGATGCT
GCGTAACCGAGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-467)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

98.936

100

0.989
  comEC Vibrio campbellii strain DS40M4

66.622

100

0.666
  comEC Vibrio cholerae strain A1552

41.48

100

0.418