Detailed information NTG0557649

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KBU60_RS02915
• Genome accession: NZ_CP073068
• Coordinates: 598497..599366 (-)
• Length: 289 a.a.
• NCBI ID: WP_025552578.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain FB-11
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 593497..604366

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KBU60_RS02880 (KBU60_02880)	rpsP	594465..594713 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
KBU60_RS02885 (KBU60_02885)	rimM	594742..595290 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
KBU60_RS02890 (KBU60_02890)	trmD	595318..596061 (+)	744	WP_021453173.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
KBU60_RS02895 (KBU60_02895)	rplS	596103..596456 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
KBU60_RS02900 (KBU60_02900)	yacG	596851..597045 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
KBU60_RS02905 (KBU60_02905)	zapD	597114..597854 (-)	741	WP_005480890.1	cell division protein ZapD	-
KBU60_RS02910 (KBU60_02910)	coaE	597882..598496 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
KBU60_RS02915 (KBU60_02915)	pilD	598497..599366 (-)	870	WP_025552578.1	A24 family peptidase	Machinery gene
KBU60_RS02920 (KBU60_02920)	pilC	599431..600654 (-)	1224	WP_021453293.1	type II secretion system F family protein	Machinery gene
KBU60_RS02925 (KBU60_02925)	pilB	600678..602363 (-)	1686	WP_140287838.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KBU60_RS02930 (KBU60_02930)	pilA	602370..602834 (-)	465	WP_025524817.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
KBU60_RS02935 (KBU60_02935)	nadC	603098..603985 (-)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32343.42 Da
• Isoelectric Point: 7.1971

>NTDB_id=557649 KBU60_RS02915 WP_025552578.1 598497..599366(-) (pilD) [Vibrio parahaemolyticus strain FB-11]
MEVLQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWASLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=557649 KBU60_RS02915 WP_025552578.1 598497..599366(-) (pilD) [Vibrio parahaemolyticus strain FB-11]
ATGGAAGTGTTGCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGCAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.581	100	0.886
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	51.866	92.734	0.481
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45