NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	J7D36_RS18955	Genome accession	NZ_CP073060
Coordinates	3536864..3537724 (+)	Length	286 a.a.
NCBI ID	WP_001152278.1	Uniprot ID	-
Organism	Acinetobacter baumannii strain DETAB-P39
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3531864..3542724

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J7D36_RS16645 (J7D36_16645)	secG	3532469..3532798 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
J7D36_RS16650 (J7D36_16650)	tpiA	3532811..3533605 (-)	795	WP_212257911.1	triose-phosphate isomerase	-
J7D36_RS16655 (J7D36_16655)	pilB	3533896..3535608 (+)	1713	WP_001274987.1	type IV-A pilus assembly ATPase PilB	Machinery gene
J7D36_RS16660 (J7D36_16660)	pilC	3535638..3536864 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
J7D36_RS18955 (J7D36_16665)	pilD	3536864..3537724 (+)	861	WP_001152278.1	prepilin peptidase	Machinery gene
J7D36_RS16670 (J7D36_16670)	coaE	3537726..3538322 (+)	597	WP_021511383.1	dephospho-CoA kinase	-
J7D36_RS16675 (J7D36_16675)	-	3538319..3539233 (-)	915	WP_000075011.1	DMT family transporter	-
J7D36_RS16680 (J7D36_16680)	rlmB	3539269..3540018 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
J7D36_RS16685 (J7D36_16685)	-	3540120..3540446 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
J7D36_RS16690 (J7D36_16690)	-	3540523..3541833 (-)	1311	WP_000753285.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32056.47 Da Isoelectric Point: 7.1041

                                >NTDB_id=557537 J7D36_RS18955 WP_001152278.1 3536864..3537724(+) (pilD) [Acinetobacter baumannii strain DETAB-P39]

MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP

IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=557537 J7D36_RS18955 WP_001152278.1 3536864..3537724(+) (pilD) [Acinetobacter baumannii strain DETAB-P39]

ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG

TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA

ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG

TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTATTTGGCCCAACCATACAAA

TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC

TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG

TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG

GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA

CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT

TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	99.301	100	0.993
pilD	Acinetobacter nosocomialis M2	98.951	100	0.99
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.768	94.755	0.5
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441

Detailed information NTG0557537