Detailed information NTG0556860

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KAQ61_RS00730
• Genome accession: NZ_CP072916
• Coordinates: 162108..162977 (-)
• Length: 289 a.a.
• NCBI ID: WP_210930173.1
• Uniprot ID: -
• Organism: Comamonas aquatica strain NEB418
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 157108..167977

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KAQ61_RS00700 (KAQ61_00700)	argJ	157380..158609 (+)	1230	WP_210930170.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
KAQ61_RS00705 (KAQ61_00705)	-	158892..159824 (+)	933	WP_043379904.1	ATP-binding protein	-
KAQ61_RS00710 (KAQ61_00710)	-	159846..160307 (+)	462	WP_210930171.1	(deoxy)nucleoside triphosphate pyrophosphohydrolase	-
KAQ61_RS00715 (KAQ61_00715)	-	160411..160620 (-)	210	WP_045267488.1	DNA gyrase inhibitor YacG	-
KAQ61_RS00720 (KAQ61_00720)	zapD	160647..161402 (-)	756	WP_210930172.1	cell division protein ZapD	-
KAQ61_RS00725 (KAQ61_00725)	coaE	161497..162105 (-)	609	WP_154163335.1	dephospho-CoA kinase	-
KAQ61_RS00730 (KAQ61_00730)	pilD	162108..162977 (-)	870	WP_210930173.1	prepilin peptidase	Machinery gene
KAQ61_RS00735 (KAQ61_00735)	pilC	162977..164200 (-)	1224	WP_045267485.1	type II secretion system F family protein	Machinery gene
KAQ61_RS00740 (KAQ61_00740)	pilB	164252..165997 (-)	1746	WP_210930174.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KAQ61_RS00745 (KAQ61_00745)	-	166156..167085 (-)	930	WP_210931650.1	polyprenyl synthetase family protein	-
KAQ61_RS00750 (KAQ61_00750)	rplU	167296..167607 (+)	312	WP_042417032.1	50S ribosomal protein L21	-
KAQ61_RS00755 (KAQ61_00755)	rpmA	167626..167886 (+)	261	WP_042416998.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31388.91 Da
• Isoelectric Point: 7.6241

>NTDB_id=556860 KAQ61_RS00730 WP_210930173.1 162108..162977(-) (pilD) [Comamonas aquatica strain NEB418]
MDFSVWSGAALAALLGLLIGSFLNVVIHRLPRMMEQQWDAECAQHRAAQAGEAYTPTPPALTLSKPRSRCPHCAHPIGWL
ENIPVLSWLYLRGQCAHCHAAISVRYPLVEVATAGLFAWCITRWGFTPTGWAWCGFSATLLALALIDWDTTYLPDDLTLP
LLWAGLLATALGWTSVTLGDAVWGAAIGYLSLWSIYWVFKLITGKEGMGYGDFKLFAALGAWFGWQALVPMILMASVIGA
VIGIALKLRSSLREGGYIPFGPFLAGAGFTAMFFGPDRLLRAVLTALGL

Nucleotide

• Length: 870 bp

>NTDB_id=556860 KAQ61_RS00730 WP_210930173.1 162108..162977(-) (pilD) [Comamonas aquatica strain NEB418]
ATGGACTTTTCTGTATGGAGCGGTGCCGCGCTGGCGGCATTGCTGGGGCTGCTGATCGGCAGCTTCTTGAACGTGGTGAT
CCATCGCCTGCCTCGCATGATGGAGCAGCAATGGGATGCCGAATGCGCACAGCACCGGGCAGCACAGGCGGGCGAGGCCT
ATACACCCACCCCCCCCGCGCTGACACTGTCCAAGCCCCGCTCGCGCTGCCCCCACTGCGCACACCCCATAGGCTGGCTG
GAGAACATCCCGGTGCTCAGCTGGCTGTACCTGCGCGGCCAATGCGCACACTGCCACGCAGCGATCAGCGTCCGCTACCC
CCTGGTGGAAGTCGCGACGGCCGGGCTGTTTGCCTGGTGCATCACCCGCTGGGGATTCACCCCGACAGGCTGGGCCTGGT
GCGGCTTCAGCGCCACCTTGCTGGCACTGGCGCTGATCGACTGGGACACCACCTACCTGCCCGATGACCTGACCCTGCCG
CTGCTGTGGGCCGGCCTGCTGGCCACTGCCCTGGGCTGGACCTCGGTGACCCTGGGCGACGCCGTCTGGGGCGCCGCCAT
CGGCTACCTGTCGCTGTGGTCCATCTACTGGGTTTTCAAACTGATCACCGGCAAGGAAGGCATGGGCTACGGTGACTTCA
AGCTGTTCGCCGCCCTGGGCGCCTGGTTCGGCTGGCAAGCCCTGGTGCCGATGATCTTGATGGCATCGGTGATCGGCGCC
GTCATCGGCATCGCCCTGAAGCTGCGCAGCAGCCTGCGCGAGGGGGGCTACATCCCGTTCGGCCCCTTTCTGGCGGGCGC
GGGCTTTACCGCGATGTTCTTCGGCCCGGACCGCCTGCTGCGCGCCGTGCTGACGGCGTTGGGCCTGTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-123)

• Type IV leader peptidase family (Peptidase_A24) (138-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.763	96.54	0.519
pilD	Vibrio campbellii strain DS40M4	48.727	95.156	0.464
pilD	Acinetobacter nosocomialis M2	48.014	95.848	0.46
pilD	Neisseria gonorrhoeae MS11	45.675	100	0.457
pilD	Acinetobacter baumannii D1279779	47.653	95.848	0.457