Detailed information NTG0556824

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: J9870_RS24990
• Genome accession: NZ_CP072913
• Coordinates: 5745406..5746752 (+)
• Length: 448 a.a.
• NCBI ID: WP_210641009.1
• Uniprot ID: -
• Organism: Pseudomonas sp. Tri1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5740406..5751752

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J9870_RS24965	pgeF	5740619..5741344 (-)	726	WP_210641003.1	peptidoglycan editing factor PgeF	-
J9870_RS24970	rluD	5741341..5742303 (-)	963	WP_003205696.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
J9870_RS24975	-	5742455..5743471 (+)	1017	WP_210641005.1	outer membrane protein assembly factor BamD	-
J9870_RS24980	-	5743597..5743830 (+)	234	WP_135847227.1	PP0621 family protein	-
J9870_RS24985	pilS	5743820..5745409 (+)	1590	WP_210641007.1	ATP-binding protein	Regulator
J9870_RS24990	pilR	5745406..5746752 (+)	1347	WP_210641009.1	sigma-54 dependent transcriptional regulator	Regulator
J9870_RS24995	-	5746838..5747203 (-)	366	WP_210641011.1	DUF6124 family protein	-
J9870_RS25000	thiO	5748438..5749538 (-)	1101	WP_210641012.1	glycine oxidase ThiO	-
J9870_RS25005	-	5749594..5749995 (-)	402	WP_210641014.1	type IV pilin protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50114.54 Da
• Isoelectric Point: 5.9869

>NTDB_id=556824 J9870_RS24990 WP_210641009.1 5745406..5746752(+) (pilR) [Pseudomonas sp. Tri1]
MNIRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLTDEAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPVATPVATIERCLLGDSPPMRSVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRSSQGFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLA
NHMLQRLAANTGSPPARLHPQALDALRNYRFPGNVRELENMLERAYTLCEQQQIEAVDLRLAEGNSASEAGNPDLMQVDN
LEDYLEDVERKLILQALEQTRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=556824 J9870_RS24990 WP_210641009.1 5745406..5746752(+) (pilR) [Pseudomonas sp. Tri1]
TTGAATATTCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATTACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGCTGACGGACGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACTGGCCTGGAACTGGTTCAACATATCCAGCAACGTTACCCCCAACTCCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGGGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGCCGGCTGCGAGAACTGGTCACCAGCGCCTTGCGCCTACCGCCGGTCGCCACGCCGGTCGCCACCA
TCGAGCGCTGCCTGCTGGGCGACTCTCCACCGATGCGCAGCGTGCGCAAACAGATCGAAAAGCTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGCGAGTCAGGCTGCGGCAAGGAACTGGTCGCCCGGTTGATCCATGAACAAGGCCCCCGCTCCAG
CCAGGGGTTTGTGCCAGTCAACTGCGGGGCAATTCCCAGCGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAACCCGGGCTGTTCCAGGCCGCCCACGGCGGAACGCTGTTCCTCGATGAAGTGGCC
GATCTGCCCCTGGCGATGCAAGTCAAACTGTTGCGAGCGATCCAGGAAAAGGCCGTACGCGCCGTGGGCGGCCAGCAGGA
AGAAGTGGTGGATGTACGCATCCTCTGCGCCACCCACAAGGACCTGGACGGCGAAGTGGCCGCCGGGCGCTTTCGCCAGG
ACCTGTACTATCGGCTGAACGTCATCGAACTGCGGGTCCCGCCGTTGCGTGAGCGCCGTGAAGATATCGAGCCGCTGGCC
AACCACATGCTCCAGCGCCTGGCAGCCAACACCGGCAGCCCACCGGCCAGGTTGCATCCCCAAGCGTTGGACGCCCTCAG
GAATTACCGCTTCCCGGGCAACGTGCGCGAACTGGAAAACATGCTCGAACGTGCCTACACCCTTTGCGAACAGCAACAGA
TCGAAGCCGTCGACCTGCGCCTGGCCGAGGGCAACAGCGCCAGCGAGGCGGGCAACCCGGATTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTCGAGCGCAAGCTCATCCTCCAGGCCCTGGAACAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGTTGGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Response regulator receiver domain (Response_reg) (9-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.279	99.107	0.786
pilR	Acinetobacter baumannii strain A118	49.891	100	0.511