Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   J9870_RS24985 Genome accession   NZ_CP072913
Coordinates   5743820..5745409 (+) Length   529 a.a.
NCBI ID   WP_210641007.1    Uniprot ID   -
Organism   Pseudomonas sp. Tri1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5738820..5750409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9870_RS24965 pgeF 5740619..5741344 (-) 726 WP_210641003.1 peptidoglycan editing factor PgeF -
  J9870_RS24970 rluD 5741341..5742303 (-) 963 WP_003205696.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  J9870_RS24975 - 5742455..5743471 (+) 1017 WP_210641005.1 outer membrane protein assembly factor BamD -
  J9870_RS24980 - 5743597..5743830 (+) 234 WP_135847227.1 PP0621 family protein -
  J9870_RS24985 pilS 5743820..5745409 (+) 1590 WP_210641007.1 ATP-binding protein Regulator
  J9870_RS24990 pilR 5745406..5746752 (+) 1347 WP_210641009.1 sigma-54 dependent transcriptional regulator Regulator
  J9870_RS24995 - 5746838..5747203 (-) 366 WP_210641011.1 DUF6124 family protein -
  J9870_RS25000 thiO 5748438..5749538 (-) 1101 WP_210641012.1 glycine oxidase ThiO -
  J9870_RS25005 - 5749594..5749995 (-) 402 WP_210641014.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58825.64 Da        Isoelectric Point: 7.0410

>NTDB_id=556823 J9870_RS24985 WP_210641007.1 5743820..5745409(+) (pilS) [Pseudomonas sp. Tri1]
MIAEASSPRVKQAQRLLRLYHLYRLSIGITLVLLISSKLDNRLLEFANDDLLHSGSWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFAAGGVPSAIGNLLIVSVAIGNTLLRGRVGLLIAAVATIGIVGSTFFLGLSDSNRPSSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVIGLEALNALILQRMRTGILVLDRERRVQLANESALNLLDMHDLVGQRID
DYCTALVERLQLWLNNPSLRPPSLTVAGTGLTLQPSFIALGHHDQQQILVFLEDLAQVAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRAWLEQFVRQARENAAEH
QQLHLSIDPGDYTTLMDPDQLTQVLDNLLRNAWRHSAMAHEQAEAWLKLFIDPHSQLSTLDIIDNGPGVTPEQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=556823 J9870_RS24985 WP_210641007.1 5743820..5745409(+) (pilS) [Pseudomonas sp. Tri1]
GTGATCGCTGAGGCCTCGAGCCCCCGCGTCAAACAGGCGCAGCGCCTGCTGCGCCTCTATCACCTGTATCGCCTGAGCAT
CGGCATCACCCTGGTGCTGTTGATCTCCAGCAAACTGGACAATCGCCTGCTGGAGTTCGCCAACGACGACCTGCTGCACA
GCGGTAGCTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTGTTCCTTGAGAACACTCGCCGCCCTGCCCGACTGTTC
GGCCTGGCACTCACCGACGTACTACTGCTTTCGTGGCTGTTCTTCGCCGCAGGCGGTGTGCCCAGTGCCATCGGCAACCT
GCTCATCGTCTCGGTAGCCATCGGCAATACGCTATTGCGAGGCCGGGTCGGCCTGTTGATCGCCGCTGTCGCCACGATCG
GTATCGTCGGGTCGACGTTCTTCCTCGGCCTGAGCGACTCAAACCGTCCCAGCAGCTATCTGCAAGCTGGCACCCTGGGA
GCACTGTGTTTTGCCGCCGCCCTGCTGGTACAAGGCCTGACCCGGCGACTGGAAGCCAGTGAAACCCTGGCCGAGCAACG
GGCCAGCGAAGTGATCGGCCTCGAAGCGCTCAATGCACTGATCCTGCAACGCATGCGCACCGGCATCCTGGTCCTCGACC
GCGAGCGGCGCGTGCAATTGGCCAACGAAAGCGCTTTGAACCTGCTAGACATGCATGACCTGGTCGGCCAGCGGATCGAT
GACTATTGCACCGCCCTGGTCGAACGCCTGCAATTGTGGTTGAACAACCCCAGCCTGCGCCCACCCAGCCTGACCGTGGC
TGGCACAGGCCTGACCCTGCAACCGAGCTTCATCGCCCTGGGGCATCACGATCAGCAGCAGATCCTGGTATTCCTTGAAG
ACCTGGCCCAGGTTGCCCAGCAGGCCCAGCAACTGAAACTCGCCTCCCTCGGGCGCCTCACCGCGGGCATCGCCCATGAA
ATCCGCAACCCCTTGGGGGCGATCAGCCATGCAGCGCAATTGCTGCGCGAATCCGAGGAACTGAACGACGCGGATCGACG
TCTGACGCAGATTATTCAAGATCACTCCCAACGAATGAATCGCGTCATTGAAAACGTCTTGCAACTGTCCCGCCGCCAGC
AGACCACGCCCCAACGCCTGGACCTGCGGGCCTGGCTCGAGCAGTTTGTCCGTCAGGCCCGCGAAAACGCTGCCGAGCAC
CAGCAGTTGCACTTGAGCATCGACCCAGGCGACTACACCACGCTGATGGACCCCGACCAACTCACCCAAGTGCTCGACAA
CCTGCTGCGCAACGCCTGGCGCCACAGTGCAATGGCCCATGAACAGGCCGAGGCCTGGCTGAAACTGTTTATCGATCCCC
ACAGCCAGCTGTCCACCCTGGACATCATCGATAACGGTCCTGGTGTGACGCCAGAGCAACAGGCGCATCTGTTCGAACCC
TTCTTTACCACCAGCAGCCAGGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACTTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.004

97.921

0.597