Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   L0998_RS03405 Genome accession   NZ_CP090876
Coordinates   630053..630655 (+) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain SAUR_BFS12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 625053..635655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0998_RS03370 (L0998_03370) mreC 625126..625968 (+) 843 WP_054190079.1 rod shape-determining protein MreC -
  L0998_RS03375 (L0998_03375) mreD 625968..626498 (+) 531 WP_054190078.1 rod shape-determining protein MreD -
  L0998_RS03380 (L0998_03380) rplU 626734..627042 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  L0998_RS03385 (L0998_03385) - 627048..627368 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  L0998_RS03390 (L0998_03390) rpmA 627380..627664 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  L0998_RS03395 (L0998_03395) obgE 628279..629571 (+) 1293 WP_054190077.1 GTPase ObgE -
  L0998_RS03400 (L0998_03400) - 629584..630039 (+) 456 WP_000368902.1 ACT domain-containing protein -
  L0998_RS03405 (L0998_03405) ruvA 630053..630655 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  L0998_RS03410 (L0998_03410) ruvB 630687..631691 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  L0998_RS03415 (L0998_03415) queA 631693..632718 (+) 1026 WP_054190076.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  L0998_RS03420 (L0998_03420) tgt 632741..633880 (+) 1140 WP_054190075.1 tRNA guanosine(34) transglycosylase Tgt -
  L0998_RS03425 (L0998_03425) yajC 633899..634159 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=555960 L0998_RS03405 WP_000271547.1 630053..630655(+) (ruvA) [Staphylococcus aureus strain SAUR_BFS12]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=555960 L0998_RS03405 WP_000271547.1 630053..630655(+) (ruvA) [Staphylococcus aureus strain SAUR_BFS12]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACATGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTCTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGCCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTG
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCGAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425