Detailed information NTG0555934

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: J9253_RS18870
• Genome accession: NZ_CP072801
• Coordinates: 3893483..3894910 (-)
• Length: 475 a.a.
• NCBI ID: WP_210222390.1
• Uniprot ID: -
• Organism: Thiothrix litoralis strain AS
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3888483..3899910

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J9253_RS18850 (J9253_18850)	atpG	3889101..3889958 (+)	858	WP_210222387.1	F0F1 ATP synthase subunit gamma	-
J9253_RS18855 (J9253_18855)	atpD	3889998..3891374 (+)	1377	WP_210222388.1	F0F1 ATP synthase subunit beta	-
J9253_RS18860 (J9253_18860)	-	3891387..3891812 (+)	426	WP_028490454.1	F0F1 ATP synthase subunit epsilon	-
J9253_RS18865 (J9253_18865)	-	3891864..3893429 (-)	1566	WP_210222389.1	ATP-binding protein	-
J9253_RS18870 (J9253_18870)	pilR	3893483..3894910 (-)	1428	WP_210222390.1	sigma-54 dependent transcriptional regulator	Regulator
J9253_RS18875 (J9253_18875)	-	3894942..3896570 (-)	1629	WP_210222391.1	nitrogen regulation protein NR(II)	-
J9253_RS21205	-	3896528..3896770 (-)	243	WP_266097355.1	PP0621 family protein	-
J9253_RS18880 (J9253_18880)	-	3896772..3898484 (+)	1713	WP_210224671.1	NAD+ synthase	-
J9253_RS18885 (J9253_18885)	-	3898481..3898819 (+)	339	WP_210222392.1	P-II family nitrogen regulator	-

Sequence

Protein

• Length: 475 a.a.
• Molecular weight: 52615.20 Da
• Isoelectric Point: 6.2025

>NTDB_id=555934 J9253_RS18870 WP_210222390.1 3893483..3894910(-) (pilR) [Thiothrix litoralis strain AS]
MTEQTVLIIDDEPDIRELLEITLLRMGLDTVTAGDVQTALDKIEQHQPNLCLTDMKLPDGNGIDIVRYLQKHHPHIPVAV
ITAFGSMDTAVEALKAGAYDFVSKPVDLPKLRELIQTALKLSAGKAHQTVPDDDNSATHGSSILGNSPAMQQLKGTIHKL
ARSQAPVYIHGESGSGKELVAHQIHQQGSRVKAPFVPVNCGAIPENLMESEFFGHKKGSFTGAVADKQGLFQAAHKGTLF
LDEVADLPLTMQVKLLRAIQEGAIKPVGGLEETAVDVRILSATHKSLEHEVAAGHFRQDLYYRLNVIKLKVPPLRERQED
ILLLADFFLKKIAKRWQMPPIRLSQAARDELASYAFPGNVRELENVLERASTLCDNNTIQPDDLQLPTATADAIVAPHPS
LRLRPGNDEGMEDKKGKIEVETLPAWNPVDEEAERDLILRALEQTRWNRTKAAEVLGMSFRQLRYRIQKYGLDEG

Nucleotide

• Length: 1428 bp

>NTDB_id=555934 J9253_RS18870 WP_210222390.1 3893483..3894910(-) (pilR) [Thiothrix litoralis strain AS]
ATGACCGAACAAACTGTACTGATCATCGACGATGAACCTGATATCCGCGAATTGCTGGAAATCACCCTGTTGCGCATGGG
GCTGGATACCGTCACGGCGGGCGACGTACAAACCGCGCTCGACAAAATTGAGCAACACCAGCCCAACCTGTGCCTGACCG
ACATGAAGCTGCCCGACGGCAACGGCATCGACATTGTGCGTTACCTGCAAAAACACCACCCGCACATTCCGGTCGCCGTG
ATTACGGCGTTTGGCAGCATGGATACCGCCGTGGAAGCCCTCAAAGCCGGGGCTTACGATTTTGTATCCAAACCCGTGGA
CTTGCCCAAACTGCGCGAACTAATCCAAACTGCACTGAAACTGTCAGCGGGCAAGGCACACCAAACCGTGCCTGATGATG
ACAACAGCGCCACTCACGGTAGCAGTATTCTGGGGAATTCTCCCGCCATGCAGCAACTCAAAGGCACCATCCACAAACTG
GCACGCAGCCAAGCACCGGTGTACATTCACGGCGAATCCGGCAGCGGTAAGGAATTGGTCGCGCACCAGATCCACCAGCA
AGGCTCCCGCGTCAAAGCCCCGTTTGTGCCGGTTAACTGCGGTGCTATTCCCGAAAACCTGATGGAAAGCGAATTTTTCG
GACACAAAAAAGGCAGCTTTACCGGCGCAGTCGCCGACAAACAAGGCTTGTTTCAGGCCGCCCACAAAGGCACCTTGTTT
CTGGATGAAGTCGCCGATTTACCGCTGACCATGCAGGTCAAACTCTTGCGGGCGATTCAGGAAGGTGCTATCAAACCCGT
CGGGGGTTTGGAAGAAACCGCCGTGGACGTGCGCATCCTCAGTGCCACTCACAAAAGTCTGGAACATGAAGTGGCAGCAG
GGCATTTCCGCCAGGATTTGTATTACCGCCTGAACGTCATCAAGCTAAAAGTGCCGCCATTGCGCGAACGTCAGGAAGAC
ATCCTGCTGCTGGCAGATTTTTTCCTGAAAAAGATTGCCAAACGCTGGCAAATGCCGCCGATCCGGCTCTCGCAGGCAGC
ACGCGATGAACTGGCCAGCTATGCCTTTCCCGGCAATGTGCGCGAGCTGGAAAATGTGCTGGAACGGGCGAGTACCCTGT
GCGATAACAATACGATCCAGCCGGATGATTTGCAGTTGCCGACAGCAACGGCTGATGCCATTGTTGCTCCTCATCCCTCG
CTTCGACTGCGCCCAGGGAACGACGAGGGGATGGAAGACAAGAAGGGAAAAATAGAGGTGGAGACGCTGCCTGCGTGGAA
TCCGGTGGATGAGGAAGCAGAACGCGATTTGATCCTGCGAGCGCTGGAGCAAACCCGCTGGAACCGCACCAAGGCAGCGG
AAGTGCTGGGGATGTCATTCCGACAATTGCGCTACCGGATTCAGAAGTACGGGCTGGATGAGGGGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (431-470)

• Sigma-54 interaction domain (Sigma54_activat) (143-309)

• Response regulator receiver domain (Response_reg) (6-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	60.042	99.579	0.598
pilR	Acinetobacter baumannii strain A118	48.632	100	0.486
luxO	Vibrio cholerae strain A1552	37.069	97.684	0.362