Detailed information    

insolico Bioinformatically predicted

Overview

Name   stkP   Type   Regulator
Locus tag   LT978_RS11300 Genome accession   NZ_CP090838
Coordinates   2324917..2326860 (-) Length   647 a.a.
NCBI ID   WP_069448728.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TL106     
Function   require for competence development; phosphorylate ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 2319917..2331860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS11270 (LT978_11265) - 2321593..2321955 (-) 363 WP_003154327.1 Asp23/Gls24 family envelope stress response protein -
  LT978_RS11275 (LT978_11270) rpmB 2322214..2322402 (+) 189 WP_003154328.1 50S ribosomal protein L28 -
  LT978_RS11280 (LT978_11275) spoVM 2322480..2322560 (-) 81 WP_003154329.1 stage V sporulation protein SpoVM -
  LT978_RS11285 (LT978_11280) - 2322647..2323291 (-) 645 WP_003154330.1 thiamine diphosphokinase -
  LT978_RS11290 (LT978_11285) rpe 2323357..2324010 (-) 654 WP_003154331.1 ribulose-phosphate 3-epimerase -
  LT978_RS11295 (LT978_11290) rsgA 2324012..2324902 (-) 891 WP_003154333.1 ribosome small subunit-dependent GTPase A -
  LT978_RS11300 (LT978_11295) stkP 2324917..2326860 (-) 1944 WP_069448728.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  LT978_RS11305 (LT978_11300) - 2326854..2327615 (-) 762 WP_109567486.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  LT978_RS11310 (LT978_11305) rlmN 2327621..2328712 (-) 1092 WP_003154339.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  LT978_RS11315 (LT978_11310) rsmB 2328716..2330059 (-) 1344 WP_003154341.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  LT978_RS11320 (LT978_11315) fmt 2330046..2330999 (-) 954 WP_003154342.1 methionyl-tRNA formyltransferase -
  LT978_RS11325 (LT978_11320) def 2331004..2331486 (-) 483 WP_003154343.1 peptide deformylase -

Sequence

Protein


Download         Length: 647 a.a.        Molecular weight: 71702.25 Da        Isoelectric Point: 4.9851

>NTDB_id=555692 LT978_RS11300 WP_069448728.1 2324917..2326860(-) (stkP) [Bacillus amyloliquefaciens strain TL106]
MLTGKRISGRYHILRPIGGGGMANVFLAEDIILEREVAIKILRFDFVNDIDFIRRFRREAQSASSLDHPNIVSIYDIGEE
GDIYYIVMEYVEGMTLKEYITAHGPLHPKEALSVMEQIVSAIAHAHQNHIVHRDIKPHNILIDHLGHIKVTDFGIATALT
STTITHTNSVLGSVHYLSPEQARGGLATKKSDIYALGIVLFELLTGKIPFDGESAVSIALKHLQTETPSARKWNPSIPQS
VENIILKATAKDPFHRYESAEDMEADIRTAFDAGRLNEQKFSVQDDEEMTKAIPVITDGAKAASQAETPGETDDKEQQPA
KKKKRKWPWVLLAVCFIFIMAAVLAVTVFPSLFMPKDVSVPDVRGMKYEKAEALLEKNGLRADPDITDIEDEKIEEELMV
KTDPKAGSTVKEGSSVKLYKSIGKPKTQLIDVKGRQIGDAKKALKEKGFKHVNVKEENDDSEAGTVIDQDPSAGTDMVAS
DDEVNLTVSLGPADVTLRDLKTYSKEAASGYLEDNGLQLVEKQAHSDDVPEGQVMKQEPSAGTAVKPGSNVEVTFSLGPE
EKPAKTVKEKISIPYEPEHEGEELEVQIAIDDKDHSISDTYDSFKIKEPTEKTIELKIDQGQKGYYQVMVDHKVVSYKTI
EYPKDND

Nucleotide


Download         Length: 1944 bp        

>NTDB_id=555692 LT978_RS11300 WP_069448728.1 2324917..2326860(-) (stkP) [Bacillus amyloliquefaciens strain TL106]
GTGCTAACCGGCAAGCGGATCAGCGGGCGTTATCATATCCTCCGGCCCATTGGCGGCGGCGGAATGGCAAACGTTTTTTT
AGCTGAGGACATCATTCTCGAACGTGAAGTCGCAATTAAAATTCTGCGGTTTGACTTTGTGAATGACATTGATTTTATCA
GGCGTTTCAGAAGAGAAGCACAGTCGGCATCAAGCCTCGATCATCCGAATATCGTCAGTATTTACGATATCGGGGAGGAA
GGCGATATTTATTACATTGTCATGGAATATGTGGAAGGTATGACATTAAAGGAATACATAACCGCACACGGACCGCTTCA
TCCGAAAGAAGCGCTGTCCGTTATGGAGCAGATCGTCTCGGCCATCGCCCATGCCCATCAAAACCATATCGTGCACCGGG
ATATTAAACCGCACAATATATTGATAGATCATTTAGGGCATATCAAGGTGACGGATTTCGGCATCGCCACAGCGCTTACG
TCTACGACAATCACACATACGAATTCTGTGCTGGGCTCGGTTCATTATTTGTCTCCGGAGCAGGCGAGAGGCGGCCTGGC
AACGAAAAAATCAGATATTTACGCGCTCGGCATCGTGCTGTTTGAGCTTTTAACAGGCAAAATCCCTTTTGACGGAGAAT
CAGCCGTCAGCATAGCGCTAAAGCACCTGCAAACAGAAACGCCTTCCGCCAGAAAGTGGAACCCTTCCATTCCGCAGAGC
GTTGAAAACATTATTTTAAAGGCAACCGCCAAAGACCCGTTTCACCGCTATGAAAGCGCGGAGGACATGGAGGCGGACAT
CAGAACGGCTTTTGACGCCGGCAGGCTGAATGAACAAAAATTTTCCGTGCAGGATGATGAGGAAATGACAAAAGCCATTC
CCGTTATTACTGACGGCGCAAAAGCCGCGTCTCAGGCGGAAACGCCGGGGGAGACGGATGATAAGGAACAGCAGCCAGCC
AAAAAGAAAAAACGGAAATGGCCGTGGGTTTTGCTGGCCGTCTGTTTCATTTTCATTATGGCGGCTGTTCTTGCGGTCAC
CGTGTTCCCGTCTTTATTTATGCCTAAAGATGTAAGCGTCCCCGACGTACGGGGCATGAAGTACGAAAAAGCGGAAGCCC
TGCTTGAAAAGAACGGGCTCCGGGCTGATCCTGATATAACGGACATTGAAGATGAAAAAATAGAAGAGGAATTAATGGTC
AAAACGGACCCAAAAGCGGGGTCTACCGTTAAAGAAGGCTCTTCTGTAAAACTGTACAAAAGCATCGGAAAACCGAAAAC
CCAGCTGATCGACGTGAAAGGACGGCAGATCGGCGACGCAAAAAAAGCGCTGAAGGAAAAAGGTTTCAAACATGTCAATG
TCAAAGAAGAAAACGATGACAGCGAGGCCGGCACCGTAATTGATCAGGACCCGTCAGCCGGCACCGATATGGTCGCAAGC
GACGATGAAGTCAATCTAACGGTCAGCCTCGGCCCGGCGGACGTTACGCTGAGGGACTTAAAGACTTACAGCAAAGAAGC
GGCTTCAGGGTATCTTGAAGATAACGGCCTGCAGCTTGTTGAAAAACAAGCCCATTCAGATGACGTGCCGGAAGGACAAG
TCATGAAACAAGAGCCGTCAGCCGGCACTGCGGTTAAGCCGGGAAGTAATGTTGAAGTGACGTTCTCGCTCGGACCTGAA
GAAAAACCGGCGAAAACGGTAAAAGAAAAAATCAGCATTCCTTACGAACCCGAACATGAAGGGGAAGAGCTTGAAGTGCA
AATCGCCATCGATGATAAGGACCACAGCATCTCTGATACGTATGACTCATTTAAAATAAAAGAGCCGACCGAAAAAACAA
TTGAACTGAAGATTGATCAGGGACAGAAGGGGTATTATCAAGTGATGGTCGATCATAAAGTCGTCAGCTACAAAACGATT
GAATACCCGAAAGATAATGACTGA

Domains

Predicted by InterProScan.

PASTA domain (PASTA)

(431-489)

PASTA domain (PASTA)

(495-556)

PASTA domain (PASTA)

(358-419)

Protein kinase domain (Pkinase)

(11-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  stkP Streptococcus pneumoniae TIGR4

38.799

95.209

0.369
  stkP Streptococcus pneumoniae D39

38.636

95.209

0.368
  stkP Streptococcus pneumoniae R6

38.636

95.209

0.368
  stkP Streptococcus pneumoniae Rx1

38.474

95.209

0.366