Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   SMUNUM_RS08565 Genome accession   NZ_AP014571
Coordinates   1733599..1734297 (-) Length   232 a.a.
NCBI ID   WP_002263491.1    Uniprot ID   Q8DSH0
Organism   Streptococcus mutans LP13     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1728599..1739297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS08535 (SMNUM_1615) - 1729204..1729365 (-) 162 WP_002268661.1 type A2 lanthipeptide -
  SMUNUM_RS08540 (SMNUM_1616) - 1729560..1729715 (-) 156 WP_002296231.1 lacticin 481 family lantibiotic -
  SMUNUM_RS08545 (SMNUM_1617) - 1729755..1729907 (-) 153 WP_002269377.1 lacticin 481 family lantibiotic -
  SMUNUM_RS08550 (SMNUM_1618) - 1729934..1730092 (-) 159 WP_002268660.1 lacticin 481 family lantibiotic -
  SMUNUM_RS08555 (SMNUM_1619) - 1730367..1731623 (+) 1257 Protein_1637 ISL3-like element ISSmu2 family transposase -
  SMUNUM_RS08560 (SMNUM_1621) - 1732202..1733581 (-) 1380 WP_002266300.1 HAMP domain-containing sensor histidine kinase -
  SMUNUM_RS08565 (SMNUM_1622) scnR 1733599..1734297 (-) 699 WP_002263491.1 response regulator Regulator
  SMUNUM_RS08570 - 1734402..1735357 (-) 956 Protein_1640 reverse transcriptase domain-containing protein -
  SMUNUM_RS10405 (SMNUM_1623) - 1735476..1735655 (-) 180 Protein_1641 transposase -
  SMUNUM_RS08575 (SMNUM_1624) gatB 1735902..1737341 (-) 1440 WP_002282561.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  SMUNUM_RS08580 (SMNUM_1625) gatA 1737341..1738807 (-) 1467 WP_002263829.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  SMUNUM_RS08585 (SMNUM_1626) gatC 1738807..1739109 (-) 303 WP_002263475.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26106.25 Da        Isoelectric Point: 6.3461

>NTDB_id=55568 SMUNUM_RS08565 WP_002263491.1 1733599..1734297(-) (scnR) [Streptococcus mutans LP13]
MSFESQLLKKHILIVDDDTSLNQSIKEVLMSRGFNNISSAYSIDEGIDIFSVSKIDLIILDVMLPDGEGYLLAKYIRKSS
DVPILFLTAKNSPDDEIKGLDSGGDDFVTKPFLPKTLSYRIIALLRRSYKGESELIELTFCTIDLNNASVLKGNEHLSLT
PTEIQILRKLYVNKNHIVSTEAICDAVWGLENFGYEKSLMVHIRNIREKIEKNSSKPVHLITVKGLGYKLVI

Nucleotide


Download         Length: 699 bp        

>NTDB_id=55568 SMUNUM_RS08565 WP_002263491.1 1733599..1734297(-) (scnR) [Streptococcus mutans LP13]
GTGTCTTTTGAATCACAATTATTGAAAAAGCATATCCTAATCGTAGATGATGATACATCATTGAACCAGTCCATCAAAGA
GGTTTTGATGAGTCGAGGGTTTAACAATATCAGTTCTGCCTATAGTATAGATGAAGGGATTGATATTTTTTCGGTATCAA
AGATTGATTTGATCATACTGGATGTCATGTTGCCCGATGGGGAAGGTTATTTATTGGCCAAATACATTCGAAAATCGTCA
GATGTCCCCATTTTATTTTTAACCGCAAAAAATAGTCCCGATGATGAAATCAAAGGACTTGATTCAGGAGGAGATGATTT
TGTCACCAAACCATTTCTTCCCAAGACCCTGTCTTATAGGATTATAGCCTTACTGAGGCGATCCTACAAAGGTGAATCTG
AACTTATCGAACTTACTTTCTGCACCATTGATTTAAATAATGCCAGTGTTTTAAAAGGCAATGAACATCTATCACTGACC
CCAACAGAAATTCAGATTCTTCGCAAACTTTATGTCAATAAAAACCACATCGTCTCCACAGAAGCGATTTGTGATGCGGT
GTGGGGACTTGAAAACTTTGGATACGAAAAATCATTAATGGTACATATCCGCAATATCAGAGAAAAAATCGAGAAAAACT
CCTCAAAGCCAGTGCATCTCATTACAGTCAAGGGTCTCGGGTATAAGCTGGTCATTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DSH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

42.411

96.552

0.409
  vicR Streptococcus mutans UA159

37.826

99.138

0.375
  micA Streptococcus pneumoniae Cp1015

36.842

98.276

0.362

Multiple sequence alignment