Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   J6320_RS21760 Genome accession   NZ_CP072782
Coordinates   2933314..2933958 (+) Length   214 a.a.
NCBI ID   WP_033907423.1    Uniprot ID   A0AAW9BJA8
Organism   Vibrio alginolyticus strain HY9901     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2931892..2932326 2933314..2933958 flank 988


Gene organization within MGE regions


Location: 2931892..2933958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6320_RS21750 (J6320_21635) tnpA 2931892..2932326 (-) 435 WP_154204313.1 IS200/IS605 family transposase -
  J6320_RS21755 (J6320_21640) ssb 2932497..2933036 (-) 540 WP_005381235.1 single-stranded DNA-binding protein Machinery gene
  J6320_RS21760 (J6320_21645) qstR 2933314..2933958 (+) 645 WP_033907423.1 LuxR C-terminal-related transcriptional regulator Regulator

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24469.38 Da        Isoelectric Point: 9.7165

>NTDB_id=555640 J6320_RS21760 WP_033907423.1 2933314..2933958(+) (qstR) [Vibrio alginolyticus strain HY9901]
MRKSAYARKLFLISMEDNAQKKVAALEKYIDMSIPVISTEALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=555640 J6320_RS21760 WP_033907423.1 2933314..2933958(+) (qstR) [Vibrio alginolyticus strain HY9901]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAAGTGGCGGCACTCGA
AAAGTACATTGATATGAGCATCCCGGTGATTTCAACCGAAGCACTCATGGAAGCCAAGCCACAACACCGTAATAAAATTC
TACTGATAGACTTCAGTGAACATAAATCACTTGTTCAATCGATCAAAAACTTGCCTCTTGTATGGAAAAACTTTGAAACC
GTTGTCTTCAACGTGCCTAAAAGACTAACCACGGATGAACTTCTTTCATTTGGTCAATTAAAAGGTGTGTTTTATTCTGA
AGATACGCTAGAGCAAATTGGAGAAGGGTTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGCAATGTCATTAATACTCATACTGCACCAGCTACGGTAGACCTAACCATTCGTGAGCTACAA
GTACTGCGTTGCCTACAAGCTGGCGCCTCGAACAGTCAGATGGCCGAAGAGTTATTCGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCCGTAAAGAACCGAGTACAGGCAATCGCCTGGGCAGACCAAAACTTAATGT
CGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

95.327

100

0.953
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.336

100

0.523