Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   J6320_RS12940 Genome accession   NZ_CP072782
Coordinates   1063363..1065618 (+) Length   751 a.a.
NCBI ID   WP_213962930.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain HY9901     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1058363..1070618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6320_RS12915 (J6320_12850) - 1058722..1059291 (-) 570 WP_065274290.1 hypothetical protein -
  J6320_RS12920 (J6320_12855) lolC 1059541..1060749 (+) 1209 WP_053349430.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  J6320_RS12925 (J6320_12860) lolD 1060742..1061449 (+) 708 WP_005378457.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  J6320_RS12930 (J6320_12865) lolE 1061452..1062696 (+) 1245 WP_064376276.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  J6320_RS12935 (J6320_12870) - 1062845..1063354 (-) 510 WP_005387834.1 DUF2062 domain-containing protein -
  J6320_RS12940 (J6320_12875) comEC 1063363..1065618 (+) 2256 WP_213962930.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  J6320_RS12945 (J6320_12880) msbA 1065650..1067398 (+) 1749 WP_186584398.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  J6320_RS12950 (J6320_12885) lpxK 1067404..1068411 (+) 1008 WP_005387842.1 tetraacyldisaccharide 4'-kinase -
  J6320_RS12955 (J6320_12890) - 1068392..1068571 (+) 180 WP_009707122.1 Trm112 family protein -
  J6320_RS12960 (J6320_12895) kdsB 1068571..1069326 (+) 756 WP_047100855.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 84444.32 Da        Isoelectric Point: 8.1097

>NTDB_id=555619 J6320_RS12940 WP_213962930.1 1063363..1065618(+) (comEC) [Vibrio alginolyticus strain HY9901]
MTLSEKSWTLALFVASVISSAWWPTIPDWRWLLLGIITTGSIIKLRRGLISIGAIAGFMVVIVHGNVLESQRQALFQAGE
NITIIGKVDSPFTQISHGYEGIVAIEAVNSQTLLPFLKPKIRLITPFPLDVNSEFTTSISLKPITGLRNEAGFDAEKHAM
GKNIIARAVVNKDAKWIVRSNVSLRQSIIADVADDVSSLHHFSLISALVFADRSWLSKEDWQALRDSGLLHLVSISGLHI
GMAFTFGLVVGGTVRYLLPQYQLLPSLYGLIFAVAYAWLADFSLPTTRAVSVCVVYVLQKYTLVHWTSWRVLLLAVSLQL
LVQPFTSYSMSFWLSYLSVCAVLFAINLIRHQRGGWKARLKALLLTQLMLSALIVPVSGHFFSGFSLSSIAYNLVFIPWF
GFIVVPLMFLALFSSLFLEMIAKPLWHLVDWSLQPLSTSIQYAIGSWQPISMEMTMLVMAIVVCLIFQRFMSQYAWYLLL
GIVISIKLASEYEPHWRIDVLDVGHGLAVVVEKDDKVLLYDTGKAWQSGSIAEQVVTPVLHQRGYESIDTLILSHSDNDH
AGGRFFIEDAFSPQRKLSSQFFIEYEPCTRGDQWKWQGLNMEVLWPPALVQRAYNPHSCVLRLTDPISNFSMLFTGDIEA
ISEWILLREPGKLQSDVMLVPHHGSKSSSNPRFIESVSPSVAVASLAKNNRWGMPAENVVASYRKLGITWLDTGEGGQVS
FFIHRDNWHSETKRSDTFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=555619 J6320_RS12940 WP_213962930.1 1063363..1065618(+) (comEC) [Vibrio alginolyticus strain HY9901]
ATGACTCTCTCAGAAAAAAGTTGGACCTTGGCGTTATTTGTAGCGAGCGTAATCTCGTCGGCTTGGTGGCCGACAATACC
AGATTGGCGTTGGTTGCTGCTGGGAATAATAACCACTGGCTCAATAATCAAATTACGTCGTGGCTTAATTAGCATAGGCG
CAATTGCGGGCTTTATGGTTGTCATCGTCCACGGCAATGTATTGGAGTCTCAGAGACAAGCCCTTTTTCAAGCAGGGGAG
AATATTACCATAATTGGTAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGTTATGAAGGTATTGTCGCGATAGAAGC
GGTAAATTCTCAAACTCTGTTACCTTTTCTTAAACCTAAAATCCGTCTTATTACGCCTTTTCCACTCGATGTTAACAGTG
AGTTTACGACATCCATCTCGTTAAAGCCGATTACAGGTCTACGCAACGAAGCTGGCTTTGATGCTGAAAAGCACGCGATG
GGTAAAAATATTATCGCCCGAGCGGTTGTTAACAAAGATGCTAAGTGGATTGTTCGTTCTAATGTATCTCTGCGTCAATC
CATTATTGCCGATGTCGCTGATGATGTGTCTTCCCTTCATCATTTCTCGTTAATAAGTGCGTTAGTTTTTGCTGACCGTT
CTTGGTTGTCTAAGGAAGATTGGCAAGCGCTCAGGGACAGTGGTTTACTGCATTTGGTCTCCATTTCTGGTTTACATATT
GGTATGGCGTTTACTTTTGGGCTAGTCGTGGGCGGTACCGTTCGTTATCTATTACCCCAATACCAGTTGTTACCTAGCTT
ATATGGGCTGATCTTCGCTGTTGCCTACGCTTGGTTAGCGGATTTCTCTCTGCCTACTACGCGAGCAGTGTCGGTATGCG
TTGTTTACGTTCTCCAGAAGTATACTCTGGTGCACTGGACTTCTTGGCGAGTTCTTTTGCTTGCAGTATCTCTACAACTG
CTTGTCCAACCTTTTACATCCTACAGTATGAGCTTTTGGTTATCATACCTCTCCGTTTGTGCGGTATTGTTCGCAATTAA
TTTGATTCGACATCAAAGGGGAGGTTGGAAAGCGCGATTAAAAGCGTTATTGCTTACTCAATTGATGTTGAGCGCTTTAA
TCGTACCTGTTAGTGGCCATTTCTTCTCCGGTTTTAGTTTGTCCTCAATAGCCTACAACTTGGTATTTATTCCTTGGTTC
GGATTTATCGTTGTACCTTTGATGTTTCTAGCCCTGTTCTCATCTTTGTTTCTTGAAATGATAGCGAAGCCTCTGTGGCA
TTTGGTGGACTGGTCATTACAGCCATTGAGCACGTCAATACAGTACGCAATAGGTTCTTGGCAACCTATTAGCATGGAAA
TGACAATGCTGGTTATGGCGATAGTGGTTTGCTTAATATTTCAACGGTTCATGTCTCAGTACGCGTGGTATTTGTTACTC
GGCATCGTTATTAGTATCAAGCTTGCATCGGAGTATGAACCGCATTGGCGTATCGATGTATTAGATGTAGGTCATGGCCT
TGCAGTGGTTGTAGAAAAAGACGACAAGGTGTTGCTGTATGACACTGGTAAAGCATGGCAAAGCGGCAGTATCGCAGAGC
AGGTCGTCACTCCGGTTTTGCATCAACGAGGTTATGAAAGCATAGATACACTGATTCTAAGCCATTCCGATAATGATCAC
GCAGGCGGCCGCTTTTTCATTGAAGATGCCTTTTCTCCACAACGTAAACTTAGTAGTCAATTCTTTATCGAATATGAGCC
TTGCACTAGAGGCGACCAATGGAAATGGCAAGGATTAAACATGGAAGTGCTCTGGCCTCCTGCACTTGTTCAACGCGCGT
ATAATCCGCACTCCTGTGTATTACGACTTACTGACCCTATTTCTAACTTTAGTATGCTTTTTACTGGTGATATTGAGGCC
ATTAGCGAGTGGATTTTGCTTAGAGAACCCGGAAAGTTACAAAGCGATGTGATGCTAGTCCCTCACCACGGGAGTAAAAG
TTCATCGAATCCTCGATTTATCGAGTCGGTGAGCCCGAGTGTGGCGGTTGCTTCTTTAGCAAAAAACAATCGATGGGGAA
TGCCAGCGGAAAATGTCGTTGCTTCATACCGAAAGCTTGGCATTACTTGGCTTGATACTGGTGAGGGTGGTCAGGTAAGC
TTCTTTATTCACCGTGATAATTGGCACTCAGAAACCAAACGTAGCGATACATTTGAGCCTTGGTATAGGCAGATGCTGCG
TAAGGGAGTAGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-465)

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-682)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

69.016

100

0.691
  comEC Vibrio campbellii strain DS40M4

65.691

100

0.658
  comEC Vibrio cholerae strain A1552

43.501

100

0.437