Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   LZ559_RS07250 Genome accession   NZ_CP090837
Coordinates   1578641..1580770 (-) Length   709 a.a.
NCBI ID   WP_044371008.1    Uniprot ID   -
Organism   Streptomyces sp. R527F     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1573641..1585770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ559_RS07235 (LZ559_07235) - 1574385..1575401 (-) 1017 WP_044371013.1 TerC family protein -
  LZ559_RS07240 (LZ559_07240) - 1575644..1577662 (-) 2019 WP_234876461.1 TerD family protein -
  LZ559_RS07245 (LZ559_07245) - 1577848..1578426 (-) 579 WP_030586713.1 TerD family protein -
  LZ559_RS07250 (LZ559_07250) uvrB 1578641..1580770 (-) 2130 WP_044371008.1 excinuclease ABC subunit UvrB Machinery gene
  LZ559_RS07255 (LZ559_07255) - 1580810..1581718 (-) 909 WP_030814055.1 MHYT domain-containing protein -
  LZ559_RS07260 (LZ559_07260) - 1581950..1582837 (+) 888 WP_030814052.1 glycerophosphodiester phosphodiesterase family protein -
  LZ559_RS07265 (LZ559_07265) - 1582921..1583478 (+) 558 WP_030814051.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  LZ559_RS07270 (LZ559_07270) - 1583570..1584859 (+) 1290 WP_234876462.1 MFS transporter -
  LZ559_RS07275 (LZ559_07275) - 1584934..1585296 (-) 363 WP_030814047.1 cupin domain-containing protein -

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 79984.84 Da        Isoelectric Point: 4.8594

>NTDB_id=555546 LZ559_RS07250 WP_044371008.1 1578641..1580770(-) (uvrB) [Streptomyces sp. R527F]
MRPVSKIERSVRPFEVVSPYQPSGDQPAAIAELERRIRADEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTP
QEYVDRMVQLKVGEEIDRDQLLRRFVEMQYTRNDLAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIENLSTLHPLTG
EIISEDPTVHVFPASHYVAGPERMERAVSGIEQELEQRLAELEKQGKMLEAQRLRMRTTYDIEMLRQIGTCSGVENYSMH
FDDRAPGTAPNTLLDYFPDDFLLVLDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSAMDNRPLKWEEFLKRIDQTVYL
SATPGKYELSRGDGFVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRERTERDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKVTPAMEQAIDETNRRREKQIAYNTERGIDPQPLRKKINDIVATIAREEIDTEQLLGTGYRQGKETKAPVPALGGKAA
KGGAKGKAAKAGAVVSDRPATELAGIIEEMTDRMRAAAADLQFEVAARLRDEVGELKKELRQMKEAGMA

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=555546 LZ559_RS07250 WP_044371008.1 1578641..1580770(-) (uvrB) [Streptomyces sp. R527F]
ATGCGGCCCGTTTCCAAGATCGAACGTTCGGTGCGGCCTTTCGAGGTCGTCAGTCCCTACCAGCCCAGCGGCGACCAGCC
CGCGGCCATCGCCGAGCTGGAGCGGCGTATCCGCGCCGATGAGAAGGACGTCGTCCTGCTCGGCGCGACCGGCACCGGCA
AGTCGGCGACCACCGCCTGGATGATCGAGAAGCTGCAGCGCCCCACCCTGGTGATGGCGCCGAACAAGACGCTCGCCGCC
CAGCTGGCCAACGAGTTCCGCGAACTCCTCCCGAACAACGCGGTGGAGTATTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGGCTGCGTCACT
CCGCGACGAATTCGCTGCTCACCCGGCGCGACGTCATCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTCGGTACGCCC
CAGGAGTACGTGGACCGCATGGTCCAGCTCAAGGTCGGCGAGGAGATCGACCGCGACCAGCTGCTGCGCCGCTTCGTCGA
GATGCAGTACACCCGCAACGACCTGGCGTTCACCCGCGGCACCTTCCGGGTCCGGGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGGATCGAGATGTTCGGCGACGAGATCGAGAACCTGTCCACGCTCCACCCGCTCACCGGC
GAGATCATCAGCGAGGACCCCACGGTCCACGTCTTCCCCGCCAGCCACTATGTCGCCGGGCCCGAGCGCATGGAGCGGGC
CGTCAGCGGTATCGAGCAGGAGCTGGAGCAGCGCCTGGCCGAGCTGGAGAAGCAGGGCAAGATGCTGGAGGCCCAGCGAC
TGCGCATGCGCACCACGTACGACATCGAGATGCTCCGCCAGATCGGCACCTGCTCCGGCGTCGAGAACTACTCGATGCAC
TTCGACGACCGCGCGCCCGGCACCGCCCCCAACACCCTCCTCGACTACTTCCCGGACGACTTCCTGCTCGTCCTGGACGA
GTCCCACGTGACCGTCCCGCAGATCGGCGCGATGTACGAGGGGGACGCCTCCCGCAAGCGGACCCTCGTCGACCACGGCT
TCCGGCTGCCCTCGGCCATGGACAACCGGCCGCTGAAGTGGGAGGAGTTCCTGAAGCGGATCGACCAGACGGTGTACCTC
TCCGCCACCCCGGGGAAGTACGAGCTCTCGCGCGGCGACGGGTTCGTCGAGCAGATCATCCGCCCCACCGGTCTCGTCGA
CCCCGAGGTCGTGGTCAAACCCACCGAGGGCCAGATCGACGACCTGGTCCACGAGATCCGCGAGCGCACCGAGCGCGACG
AGCGGGTCCTGGTCACCACGCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTGGAGCTCGGCATCCAGGTC
CGCTATCTGCACAGCGACGTCGACACCCTGCGCCGTATCGAGCTGCTGCGCGAGCTGCGCTCCGGTGAGTACGACGTGCT
CGTCGGCATCAACCTGCTGCGCGAGGGCCTCGACCTTCCCGAGGTGTCCCTCGTGGCCATTCTCGACGCCGACAAGCAGG
GCTTCCTGCGTTCCGGCACCTCGCTCATCCAGACCATCGGCCGCGCCGCCCGTAACGTCTCCGGCCAGGTCCACATGTAC
GCCGACAAGGTCACCCCGGCCATGGAACAGGCGATCGACGAGACGAACCGGCGCCGCGAGAAGCAGATCGCCTACAACAC
CGAGCGGGGCATCGACCCGCAGCCGCTCCGCAAGAAGATCAACGACATCGTCGCGACCATCGCCCGCGAGGAGATCGACA
CCGAACAGCTCCTCGGCACCGGCTACCGGCAGGGCAAGGAGACCAAGGCCCCGGTCCCCGCGCTCGGCGGCAAGGCGGCC
AAGGGCGGGGCGAAGGGCAAGGCCGCCAAGGCCGGCGCGGTCGTCAGCGACCGGCCCGCGACCGAACTGGCCGGGATCAT
CGAGGAGATGACCGACCGGATGCGGGCCGCCGCCGCGGATCTGCAGTTCGAGGTGGCCGCCCGGCTGCGCGACGAGGTCG
GCGAACTGAAGAAGGAACTGCGGCAGATGAAGGAAGCGGGCATGGCCTGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB interaction domain (UvrB_inter)

(168-257)

Type III restriction enzyme, res subunit (ResIII)

(25-145)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)

UvrB/uvrC motif (UVR)

(667-699)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.395

97.038

0.547
  uvrB Streptococcus pneumoniae R6

56.395

97.038

0.547
  uvrB Streptococcus pneumoniae D39

56.395

97.038

0.547