Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   J8Y16_RS07905 Genome accession   NZ_CP072766
Coordinates   1510474..1511076 (-) Length   200 a.a.
NCBI ID   WP_212804975.1    Uniprot ID   -
Organism   Bacillus cereus strain BC06     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1505474..1516076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8Y16_RS07885 (J8Y16_07885) dnaD 1505799..1506506 (+) 708 WP_000728549.1 DNA replication protein DnaD -
  J8Y16_RS07890 (J8Y16_07890) nth 1506522..1507169 (+) 648 WP_000933025.1 endonuclease III -
  J8Y16_RS07895 (J8Y16_07895) - 1507173..1507691 (+) 519 WP_000442686.1 YpoC family protein -
  J8Y16_RS07900 (J8Y16_07900) - 1507715..1510408 (-) 2694 WP_071737469.1 PBP1A family penicillin-binding protein -
  J8Y16_RS07905 (J8Y16_07905) recU 1510474..1511076 (-) 603 WP_212804975.1 Holliday junction resolvase RecU Machinery gene
  J8Y16_RS07910 (J8Y16_07910) - 1511180..1512205 (+) 1026 WP_071737523.1 DUF2515 domain-containing protein -
  J8Y16_RS07915 (J8Y16_07915) - 1512472..1512648 (-) 177 WP_001982922.1 hypothetical protein -
  J8Y16_RS07920 (J8Y16_07920) - 1512734..1512976 (+) 243 WP_001252043.1 hypothetical protein -
  J8Y16_RS07925 (J8Y16_07925) - 1512992..1513336 (+) 345 WP_000872959.1 YppE family protein -
  J8Y16_RS07930 (J8Y16_07930) - 1513362..1513553 (-) 192 WP_000242663.1 YppF family protein -
  J8Y16_RS07935 (J8Y16_07935) - 1513731..1514210 (+) 480 WP_212804976.1 YppG family protein -
  J8Y16_RS07940 (J8Y16_07940) - 1514366..1514797 (+) 432 WP_078437963.1 CotD family spore coat protein -
  J8Y16_RS07945 (J8Y16_07945) - 1514854..1515408 (+) 555 WP_000862921.1 DUF1273 domain-containing protein -
  J8Y16_RS07950 (J8Y16_07950) gpsB 1515506..1515844 (+) 339 WP_000622430.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23342.72 Da        Isoelectric Point: 9.5601

>NTDB_id=555404 J8Y16_RS07905 WP_212804975.1 1510474..1511076(-) (recU) [Bacillus cereus strain BC06]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIVEHGSLLSCGYHPRIDYIRVLDMVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=555404 J8Y16_RS07905 WP_212804975.1 1510474..1511076(-) (recU) [Bacillus cereus strain BC06]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
TAGTAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACAGGTGGACGAAAATCGATTACGAAAGAAGAAATAGTAGAACATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACATGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625