Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J7155_RS06205 Genome accession   NZ_CP072707
Coordinates   1299486..1299998 (+) Length   170 a.a.
NCBI ID   WP_002288368.1    Uniprot ID   -
Organism   Enterococcus faecium strain VB3378     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1294486..1304998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7155_RS06195 (J7155_06185) gyrA 1296430..1298901 (+) 2472 WP_002303991.1 DNA gyrase subunit A -
  J7155_RS06200 (J7155_06190) rpsF 1299137..1299436 (+) 300 WP_002288366.1 30S ribosomal protein S6 -
  J7155_RS06205 (J7155_06195) ssb 1299486..1299998 (+) 513 WP_002288368.1 single-stranded DNA-binding protein Machinery gene
  J7155_RS06210 (J7155_06200) rpsR 1300024..1300260 (+) 237 WP_002288370.1 30S ribosomal protein S18 -
  J7155_RS06215 (J7155_06205) - 1300403..1302376 (+) 1974 WP_085811547.1 DHH family phosphoesterase -
  J7155_RS06220 (J7155_06210) rplI 1302382..1302834 (+) 453 WP_002288372.1 50S ribosomal protein L9 -
  J7155_RS06225 (J7155_06215) dnaB 1303108..1304475 (+) 1368 WP_002288373.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18451.99 Da        Isoelectric Point: 4.6742

>NTDB_id=555247 J7155_RS06205 WP_002288368.1 1299486..1299998(+) (ssb) [Enterococcus faecium strain VB3378]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=555247 J7155_RS06205 WP_002288368.1 1299486..1299998(+) (ssb) [Enterococcus faecium strain VB3378]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTGACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.983

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.353

0.388