Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   SMUNUM_RS02360 Genome accession   NZ_AP014571
Coordinates   453549..454031 (-) Length   160 a.a.
NCBI ID   WP_002263047.1    Uniprot ID   Q8DVK8
Organism   Streptococcus mutans LP13     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 448549..459031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS02335 (SMNUM_0416) - 449163..449684 (+) 522 WP_002263051.1 DUF1273 domain-containing protein -
  SMUNUM_RS02340 (SMNUM_0417) gpsB 449790..450128 (+) 339 WP_002263050.1 cell division regulator GpsB -
  SMUNUM_RS02350 (SMNUM_0418) - 450578..451732 (+) 1155 WP_002263884.1 class I SAM-dependent RNA methyltransferase -
  SMUNUM_RS02355 (SMNUM_0419) - 451748..453388 (+) 1641 WP_002263048.1 cell division site-positioning protein MapZ family protein -
  SMUNUM_RS02360 (SMNUM_0420) luxS 453549..454031 (-) 483 WP_002263047.1 S-ribosylhomocysteine lyase Regulator
  SMUNUM_RS02365 (SMNUM_0421) - 454176..455783 (+) 1608 WP_002263046.1 ribonuclease Y -
  SMUNUM_RS02370 (SMNUM_0422) gmk 456232..456864 (+) 633 WP_002268937.1 guanylate kinase -
  SMUNUM_RS02375 (SMNUM_0423) rpoZ 456888..457205 (+) 318 WP_002266355.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17988.67 Da        Isoelectric Point: 6.1364

>NTDB_id=55509 SMUNUM_RS02360 WP_002263047.1 453549..454031(-) (luxS) [Streptococcus mutans LP13]
MTKEVTVESFELDHIAVKAPYVRLISEEFGPKGDLITNFDIRLVQPNEDSIPTAGLHTIEHLLAKLIRQRIDGMIDCSPF
GCRTGFHLIMWGKHTTTQIATVIKASLEEIANTISWKDVPGTTIESCGNYKDHSLFSAKEWAKLILKQGISDDPFERHLV

Nucleotide


Download         Length: 483 bp        

>NTDB_id=55509 SMUNUM_RS02360 WP_002263047.1 453549..454031(-) (luxS) [Streptococcus mutans LP13]
ATGACAAAAGAAGTTACTGTTGAAAGCTTTGAACTTGATCACATTGCTGTAAAAGCCCCTTATGTCCGTCTTATTTCAGA
AGAGTTTGGACCTAAAGGCGATCTTATTACCAATTTTGATATTCGCTTAGTACAGCCTAATGAAGACTCTATTCCGACTG
CAGGCCTTCATACTATTGAACATTTACTGGCTAAGCTGATTCGTCAGCGTATTGACGGGATGATTGACTGTTCCCCTTTT
GGCTGTCGTACTGGTTTTCATCTCATCATGTGGGGTAAGCATACAACAACCCAAATAGCCACAGTCATCAAAGCAAGTTT
AGAAGAAATTGCTAATACAATCTCATGGAAAGATGTCCCTGGAACAACTATTGAGTCCTGTGGGAATTACAAAGATCATA
GCCTTTTTTCAGCTAAAGAATGGGCAAAGCTGATTTTAAAACAAGGCATTTCAGATGATCCTTTTGAGCGTCATCTAGTG
TAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DVK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

38.926

93.125

0.362

Multiple sequence alignment