Detailed information NTG0555041

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: J8Z27_RS13010
• Genome accession: NZ_CP072680
• Coordinates: 2789729..2790598 (+)
• Length: 289 a.a.
• NCBI ID: WP_252035358.1
• Uniprot ID: A0A9Q8XG74
• Organism: Vibrio sp. SCSIO 43186
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2784729..2795598

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J8Z27_RS12990 (J8Z27_12910)	nadC	2785234..2786121 (+)	888	WP_252035354.1	carboxylating nicotinate-nucleotide diphosphorylase	-
J8Z27_RS12995 (J8Z27_12915)	-	2786345..2786785 (+)	441	WP_252035355.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
J8Z27_RS13000 (J8Z27_12920)	pilB	2786785..2788434 (+)	1650	WP_252035356.1	type IV-A pilus assembly ATPase PilB	Machinery gene
J8Z27_RS13005 (J8Z27_12925)	-	2788444..2789679 (+)	1236	WP_252035357.1	type II secretion system F family protein	-
J8Z27_RS13010 (J8Z27_12930)	pilD	2789729..2790598 (+)	870	WP_252035358.1	A24 family peptidase	Machinery gene
J8Z27_RS13015 (J8Z27_12935)	coaE	2790600..2791208 (+)	609	WP_252035359.1	dephospho-CoA kinase	-
J8Z27_RS13020 (J8Z27_12940)	zapD	2791242..2791982 (+)	741	WP_252035360.1	cell division protein ZapD	-
J8Z27_RS13025 (J8Z27_12945)	yacG	2792035..2792226 (+)	192	WP_252035361.1	DNA gyrase inhibitor YacG	-
J8Z27_RS13030 (J8Z27_12950)	rplS	2792358..2792711 (-)	354	WP_045977783.1	50S ribosomal protein L19	-
J8Z27_RS13035 (J8Z27_12955)	trmD	2792753..2793496 (-)	744	WP_252035362.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
J8Z27_RS13040 (J8Z27_12960)	rimM	2793543..2794091 (-)	549	WP_252035363.1	ribosome maturation factor RimM	-
J8Z27_RS13045 (J8Z27_12965)	rpsP	2794121..2794369 (-)	249	WP_005438039.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32519.43 Da
• Isoelectric Point: 6.2214

>NTDB_id=555041 J8Z27_RS13010 WP_252035358.1 2789729..2790598(+) (pilD) [Vibrio sp. SCSIO 43186]
MELFNYYPWLFPTLATLFGLIIGSFLNVVIHRLPKMMEREWRHECAESFPEYGIQPPEGTYNLSVPRSTCPSCNTQIRNI
DNIPLISWLALRGQCRACQHRISPRYPLVELISGLMSFSIAYQFELSVFAVALLFFTFVLIAATFIDLDTMLLPDQLTLP
LIWSGIALSLLGLSPVSLQDSVTGAIVGYLCLWSIYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQYLPVIVLLSSLVGL
LFGLIQLRLQKQGIDKAFPFGPYLAIAGWISAMWGESIINWYFTQILGI

Nucleotide

• Length: 870 bp

>NTDB_id=555041 J8Z27_RS13010 WP_252035358.1 2789729..2790598(+) (pilD) [Vibrio sp. SCSIO 43186]
ATGGAACTTTTCAATTATTACCCATGGTTGTTTCCAACCCTAGCGACCCTTTTTGGTCTGATCATAGGCAGCTTTCTTAA
CGTCGTCATTCATCGCTTGCCTAAGATGATGGAACGAGAGTGGCGACATGAATGCGCAGAGAGTTTTCCAGAGTATGGCA
TTCAGCCACCTGAGGGGACTTATAATCTGAGTGTCCCTAGGTCAACTTGCCCAAGCTGTAACACTCAAATTCGTAATATT
GATAATATTCCGCTGATCAGTTGGCTTGCTTTACGTGGTCAATGCCGAGCTTGTCAACACCGCATTTCCCCACGCTACCC
TCTCGTTGAACTTATCTCGGGGTTAATGAGTTTCTCGATTGCTTACCAATTTGAACTGAGTGTGTTCGCCGTTGCCTTAT
TGTTCTTTACCTTTGTTTTAATCGCAGCAACTTTCATCGATCTCGATACTATGCTGTTGCCTGATCAATTGACCTTACCA
CTGATTTGGTCTGGGATAGCATTATCATTACTAGGCTTGAGCCCTGTGTCTTTGCAAGACTCTGTGACTGGAGCAATAGT
AGGCTATTTGTGCCTATGGTCTATTTACTGGGGGTTCAAACTTCTCACTGGTAAAGAAGGCATGGGTTATGGTGATTTCA
AGCTTCTTGCCGCACTAGGCGCTTGGTTAGGCTGGCAGTATTTGCCTGTTATTGTTCTGCTTTCCTCACTCGTTGGATTA
CTTTTTGGCCTAATTCAACTACGACTACAAAAACAAGGGATAGACAAAGCCTTCCCGTTTGGCCCCTACCTTGCGATTGC
AGGCTGGATCAGTGCAATGTGGGGAGAAAGCATCATCAACTGGTACTTTACACAAATTCTGGGGATCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	76.389	99.654	0.761
pilD	Vibrio campbellii strain DS40M4	74.74	100	0.747
pilD	Acinetobacter nosocomialis M2	50.741	93.426	0.474
pilD	Acinetobacter baumannii D1279779	50.37	93.426	0.471
pilD	Neisseria gonorrhoeae MS11	46.909	95.156	0.446