Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J5248_RS05555 Genome accession   NZ_CP072664
Coordinates   1125841..1126608 (-) Length   255 a.a.
NCBI ID   WP_065843754.1    Uniprot ID   A0A5L9WQ03
Organism   Campylobacter fetus subsp. fetus strain CITCf01     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1120841..1131608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5248_RS05525 (J5248_01081) tatB 1121134..1121589 (+) 456 WP_002849729.1 Sec-independent protein translocase protein TatB -
  J5248_RS05530 (J5248_01082) tatC 1121589..1122344 (+) 756 WP_002849731.1 twin-arginine translocase subunit TatC -
  J5248_RS05535 (J5248_01083) queA 1122341..1123360 (+) 1020 WP_038453726.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  J5248_RS05540 (J5248_01084) - 1123370..1124602 (+) 1233 WP_065841853.1 hypothetical protein -
  J5248_RS05545 (J5248_01085) - 1124599..1125462 (-) 864 WP_038453728.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  J5248_RS05550 (J5248_01086) dprB 1125470..1125844 (-) 375 WP_002849740.1 Holliday junction resolvase RuvX Machinery gene
  J5248_RS05555 (J5248_01087) dprA 1125841..1126608 (-) 768 WP_065843754.1 DNA-processing protein DprA Machinery gene
  J5248_RS05560 (J5248_01088) - 1126592..1127755 (-) 1164 WP_011732090.1 divergent polysaccharide deacetylase family protein -
  J5248_RS05565 (J5248_01089) ilvC 1127756..1128778 (-) 1023 WP_002849745.1 ketol-acid reductoisomerase -
  J5248_RS05570 (J5248_01090) - 1128925..1129737 (+) 813 WP_002849747.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28266.38 Da        Isoelectric Point: 5.4056

>NTDB_id=554895 J5248_RS05555 WP_065843754.1 1125841..1126608(-) (dprA) [Campylobacter fetus subsp. fetus strain CITCf01]
MDFITDILSLKKLKKPVNKLYYKGNLELLNFPKVAIVGSRKCTSYTKNIVLSLASTLKNYGICVVSGAAIGTDIHAHEGA
FPNTIAVFGNGLNNIYPAQNSKMIEKIYKDALALSEYEPNTFATPWSFLERNRIVVSLSDAVIIAEADIKSGSMSSARLA
LDMGIPLFVLPQRFNESNGTNDLLSKNRANLIADFDEFASKFGSLNSDLSKDDVLEFIKINQNFDECYARFGDALYEYEL
EGKISIDGVYIRILS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=554895 J5248_RS05555 WP_065843754.1 1125841..1126608(-) (dprA) [Campylobacter fetus subsp. fetus strain CITCf01]
ATGGACTTTATAACTGATATTTTAAGCTTAAAAAAGCTAAAAAAACCTGTAAATAAACTATATTATAAAGGAAATTTAGA
ACTCTTAAATTTCCCCAAAGTAGCGATAGTCGGCTCGAGAAAATGTACTTCTTATACAAAAAATATTGTTTTGAGTTTAG
CCTCTACTCTTAAAAATTACGGTATTTGCGTAGTTAGCGGAGCGGCTATAGGTACCGATATACATGCTCACGAAGGCGCT
TTTCCAAATACCATCGCAGTCTTTGGAAATGGACTTAATAATATATATCCGGCTCAAAACTCAAAAATGATAGAAAAAAT
TTATAAAGACGCATTGGCTCTTAGCGAGTATGAACCTAATACTTTTGCGACTCCTTGGAGTTTTTTAGAAAGAAACAGAA
TAGTCGTATCCCTAAGCGACGCCGTGATCATAGCAGAAGCGGATATTAAAAGCGGATCAATGTCTAGCGCAAGACTCGCT
TTGGATATGGGAATTCCTCTTTTTGTATTGCCTCAAAGGTTTAATGAGAGCAATGGAACAAATGATCTGCTTAGTAAAAA
TAGGGCGAATTTAATAGCCGATTTTGATGAGTTTGCTTCTAAATTCGGAAGTTTAAACAGTGATTTGAGTAAAGACGATG
TTTTGGAATTTATAAAAATAAATCAAAACTTTGATGAGTGTTACGCGAGATTTGGAGACGCTTTGTATGAATACGAGCTG
GAGGGTAAAATTTCTATAGACGGAGTATATATAAGGATTTTATCTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5L9WQ03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.17

92.157

0.518
  dprA Helicobacter pylori 26695

47.917

94.118

0.451