Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   J5248_RS05550 Genome accession   NZ_CP072664
Coordinates   1125470..1125844 (-) Length   124 a.a.
NCBI ID   WP_002849740.1    Uniprot ID   -
Organism   Campylobacter fetus subsp. fetus strain CITCf01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1120470..1130844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5248_RS05525 (J5248_01081) tatB 1121134..1121589 (+) 456 WP_002849729.1 Sec-independent protein translocase protein TatB -
  J5248_RS05530 (J5248_01082) tatC 1121589..1122344 (+) 756 WP_002849731.1 twin-arginine translocase subunit TatC -
  J5248_RS05535 (J5248_01083) queA 1122341..1123360 (+) 1020 WP_038453726.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  J5248_RS05540 (J5248_01084) - 1123370..1124602 (+) 1233 WP_065841853.1 hypothetical protein -
  J5248_RS05545 (J5248_01085) - 1124599..1125462 (-) 864 WP_038453728.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  J5248_RS05550 (J5248_01086) dprB 1125470..1125844 (-) 375 WP_002849740.1 Holliday junction resolvase RuvX Machinery gene
  J5248_RS05555 (J5248_01087) dprA 1125841..1126608 (-) 768 WP_065843754.1 DNA-processing protein DprA Machinery gene
  J5248_RS05560 (J5248_01088) - 1126592..1127755 (-) 1164 WP_011732090.1 divergent polysaccharide deacetylase family protein -
  J5248_RS05565 (J5248_01089) ilvC 1127756..1128778 (-) 1023 WP_002849745.1 ketol-acid reductoisomerase -
  J5248_RS05570 (J5248_01090) - 1128925..1129737 (+) 813 WP_002849747.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13694.09 Da        Isoelectric Point: 8.4803

>NTDB_id=554894 J5248_RS05550 WP_002849740.1 1125470..1125844(-) (dprB) [Campylobacter fetus subsp. fetus strain CITCf01]
MIVAIDVGLKRIGVAVAVLPTVVLPSEPILRKNRNQAAKDTLKMLKEKNATKLVVGLPKGGSCEDEMERRIKHFISLVGF
DSEIIYVDEAYSSCEASELSKDSKDGRFDSIAAMVILKRYLNIL

Nucleotide


Download         Length: 375 bp        

>NTDB_id=554894 J5248_RS05550 WP_002849740.1 1125470..1125844(-) (dprB) [Campylobacter fetus subsp. fetus strain CITCf01]
TTGATAGTAGCTATCGATGTCGGACTAAAAAGAATAGGAGTTGCGGTTGCGGTTTTACCGACTGTTGTACTTCCTAGCGA
ACCTATTTTACGTAAAAATCGCAATCAGGCGGCGAAAGATACTTTAAAAATGTTAAAAGAAAAAAATGCGACAAAACTAG
TAGTCGGCTTGCCAAAAGGCGGCAGCTGCGAGGATGAAATGGAAAGACGAATTAAGCATTTTATCTCTTTAGTCGGTTTT
GATTCAGAGATAATTTATGTTGATGAAGCTTATAGCAGCTGCGAAGCTAGCGAACTGTCAAAAGATTCTAAAGACGGTAG
ATTTGATAGCATTGCCGCTATGGTGATTTTAAAAAGATATCTAAATATTTTGTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

50.388

100

0.524