Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   L0F67_RS09165 Genome accession   NZ_CP090556
Coordinates   1846739..1848760 (+) Length   673 a.a.
NCBI ID   WP_014991482.1    Uniprot ID   A0ABT1WRC5
Organism   Actinobacillus suis strain D20_277     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1841739..1853760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0F67_RS09135 (L0F67_09120) - 1842465..1843055 (+) 591 WP_014991477.1 DNA glycosylase -
  L0F67_RS09140 (L0F67_09125) - 1843059..1843877 (+) 819 WP_014991478.1 PHP domain-containing protein -
  L0F67_RS12355 - 1843917..1844536 (-) 620 Protein_1751 Fe2+/Pb2+ permease -
  L0F67_RS09155 (L0F67_09140) efeB 1844547..1845736 (-) 1190 Protein_1752 iron uptake transporter deferrochelatase/peroxidase subunit -
  L0F67_RS09160 (L0F67_09145) efeO 1845751..1846562 (-) 812 Protein_1753 iron uptake system protein EfeO -
  L0F67_RS09165 (L0F67_09150) uvrB 1846739..1848760 (+) 2022 WP_014991482.1 excinuclease ABC subunit UvrB Machinery gene
  L0F67_RS09170 (L0F67_09155) - 1848762..1849985 (+) 1224 WP_014991483.1 hypothetical protein -
  L0F67_RS09175 (L0F67_09160) - 1850383..1851605 (+) 1223 Protein_1756 ATP-binding protein -
  L0F67_RS09180 (L0F67_09165) pepP 1852025..1853311 (+) 1287 WP_014991485.1 Xaa-Pro aminopeptidase -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 76737.58 Da        Isoelectric Point: 5.2134

>NTDB_id=554894 L0F67_RS09165 WP_014991482.1 1846739..1848760(+) (uvrB) [Actinobacillus suis strain D20_277]
MSKQGKPFILHSPFKPTGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLAPNKTLAAQLYAEM
KAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQM
MLHLQVGAIIDQRELLARLAELQYTRNDQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGK
VPRYTIYPKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRAQFDIEMMNELGYCSGIENYSRYLSGRK
EGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPG
NYELEKSNGDVVDQVVRPTGLLDPIIEVRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLH
SDIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRI
TNSMQKAITETERRREKQQKYNEEHSITPQALNKKVGELLDIGQTNKPKRGKQAVKVEEKFANTYKPKSRKELEKELKQL
EQQMRDFAKDLEFEKAAAVRDKIGQLKAVLLEV

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=554894 L0F67_RS09165 WP_014991482.1 1846739..1848760(+) (uvrB) [Actinobacillus suis strain D20_277]
ATGAGCAAGCAAGGCAAACCTTTTATTTTACACAGCCCATTTAAACCCACTGGCGATCAGCCATCAGCGATTGCTAAATT
GACCGAAGGGTTAAATGACGGATTGGCGCATCAAACATTACTTGGGGTAACCGGTTCGGGTAAAACCTTTACTATTGCGA
ATGTGATCGCTCAACTCAATCGTCCGGCAATGTTGCTTGCGCCGAATAAAACGCTTGCCGCCCAGCTGTATGCGGAGATG
AAAGCCTTCTTCCCTGAAAATGCGGTGGAGTATTTCGTTTCCTACTATGACTATTACCAACCGGAAGCCTATGTGCCGAG
TAGTGATACCTTTATCGAAAAAGATGCGTCGATTAATGAACAAATCGAACAGATGCGACTGTCGGCAACCAAATCATTCC
TTGAACGCCGAGACACCATCGTAGTTGCCTCGGTTTCCGCCATTTACGGTTTGGGGGACGTGGATGCCTATATGCAAATG
ATGCTGCATTTGCAAGTGGGGGCGATTATCGACCAACGAGAGCTCCTCGCTCGTCTTGCCGAATTGCAATATACCCGCAA
TGATCAAGCATTTCAGCGTTCGACTTTCCGTGTGCGTGGCGAAGTAATTGATATTTTCCCTGCCGAATCGGATGAAATTG
CGTTACGTGTTGAATTGTTTGACGATGAAATCGAAAGCCTTTCGTTGTTTGATCCGCTTACCGGACATAGCTTGGGCAAA
GTGCCTCGCTATACTATTTATCCGAAAACGCACTACGTTACCCCTCGTGAACGCATTTTGAATGCGATTGAAGAAATTAA
ACAAGAGCTGGTGGAACGCCGCGAGTATTTCATCAAAGAAAATAAATTGTTGGAAGAACAACGTATTACTCAACGCGCGC
AATTCGATATTGAAATGATGAATGAGCTGGGCTATTGCTCGGGCATTGAAAACTATTCACGCTATCTGTCGGGCAGAAAA
GAGGGTGAACCGCCTCCGACATTATTCGACTATATGCCGGCGGACGGCTTGCTGATTATTGACGAAAGCCACGTTACCGT
GCCGCAAATCGGCGGTATGTATCGAGGCGACCGAGCCAGAAAAGAAACGTTGGTGCAATACGGTTTCCGCTTGCCGTCTG
CATTGGATAACCGCCCATTACGCTTTGAAGAATTTGAACGCCTTGCACCGCAGACGATTTATGTTTCGGCAACACCGGGC
AATTATGAATTAGAAAAATCAAACGGTGATGTGGTGGATCAAGTGGTTCGCCCAACGGGATTATTAGACCCGATCATAGA
AGTTCGCCCTGTGGCCACGCAAGTTGATGATGTGTTATCGGAAATCCATAAACGAGTGGCGGTTGATGAACGAGTGTTAA
TTACTACGCTAACCAAAAAAATGGCGGAAGATTTAACCGATTATCTCGATGAACACGGCGTGCGTGTGCGTTATCTGCAT
AGCGATATTGATACGGTTGAACGGGTAGAAATTATTCACGACTTGCGTATGGGAATGTTTGACGTATTGGTCGGCATCAA
CTTATTGCGTGAGGGCTTGGATATGCCGGAAGTGTCGTTAGTAGCGATTTTAGATGCGGATAAAGAAGGCTTTTTACGTT
CCGAACGTTCATTAATTCAGACCATCGGACGTGCAGCTCGAAACCTGAACGGTAAAGCAATTCTTTACGGCGACCGCATT
ACTAACTCTATGCAAAAAGCGATTACCGAAACCGAACGCCGCCGAGAAAAACAACAAAAATACAACGAAGAACACAGTAT
TACTCCGCAAGCCCTCAACAAAAAAGTAGGCGAATTGCTCGACATCGGACAAACCAACAAGCCGAAACGAGGCAAACAAG
CGGTCAAAGTCGAAGAAAAATTTGCAAATACCTACAAACCAAAATCCCGCAAAGAGCTGGAAAAAGAACTTAAACAGCTC
GAGCAACAAATGCGAGATTTCGCTAAAGATCTCGAGTTTGAAAAAGCGGCAGCGGTAAGGGATAAAATTGGGCAGTTGAA
GGCGGTGTTGTTGGAGGTTTAG

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(555-596)

UvrB/uvrC motif (UVR)

(634-668)

Type III restriction enzyme, res subunit (ResIII)

(16-100)

Helicase conserved C-terminal domain (Helicase_C)

(439-547)

UvrB interaction domain (UvrB_inter)

(162-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.1

98.366

0.562
  uvrB Streptococcus pneumoniae R6

57.1

98.366

0.562
  uvrB Streptococcus pneumoniae D39

57.1

98.366

0.562