Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   LZ756_RS06725 Genome accession   NZ_CP090547
Coordinates   1440405..1442414 (+) Length   669 a.a.
NCBI ID   WP_020851615.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. sandyi strain OC8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1435405..1447414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ756_RS06700 (LZ756_06700) - 1436519..1436998 (-) 480 WP_020851611.1 peroxiredoxin -
  LZ756_RS06705 (LZ756_06705) - 1437045..1437620 (-) 576 WP_011098233.1 glycine cleavage system protein R -
  LZ756_RS06710 (LZ756_06710) dapA 1437773..1438681 (+) 909 WP_024749238.1 4-hydroxy-tetrahydrodipicolinate synthase -
  LZ756_RS06715 (LZ756_06715) - 1438701..1439207 (+) 507 WP_020851613.1 hypothetical protein -
  LZ756_RS06720 (LZ756_06720) - 1439663..1440250 (-) 588 WP_020851614.1 Tfp pilus assembly protein FimT/FimU -
  LZ756_RS06725 (LZ756_06725) uvrB 1440405..1442414 (+) 2010 WP_020851615.1 excinuclease ABC subunit UvrB Machinery gene
  LZ756_RS06735 (LZ756_06735) - 1442600..1443502 (-) 903 WP_024749237.1 site-specific integrase -
  LZ756_RS06740 (LZ756_06740) - 1443547..1443870 (-) 324 WP_024749236.1 helix-turn-helix domain-containing protein -
  LZ756_RS06745 (LZ756_06745) - 1443857..1444096 (-) 240 WP_020851617.1 hypothetical protein -
  LZ756_RS06750 (LZ756_06750) - 1444093..1445511 (-) 1419 WP_020851618.1 DEAD/DEAH box helicase -
  LZ756_RS06755 (LZ756_06755) - 1445596..1445922 (+) 327 WP_020851619.1 DUF1640 domain-containing protein -
  LZ756_RS06760 (LZ756_06760) - 1445924..1446202 (-) 279 WP_020850968.1 VRR-NUC domain-containing protein -

Sequence

Protein


Download         Length: 669 a.a.        Molecular weight: 75454.01 Da        Isoelectric Point: 5.1893

>NTDB_id=554840 LZ756_RS06725 WP_020851615.1 1440405..1442414(+) (uvrB) [Xylella fastidiosa subsp. sandyi strain OC8]
MTGFFQLVSSYSPSGDQPAAVQKLVTNFHAGIAKQVLLGVTGSGKTYTIANVVEQIQKPTLVMAPNKTLAAQLYGEFKAF
FPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSSINEYIEQMRLAATKALLSRSDVLVVATVSAIYGLGAPEDYLSLRLI
LSLGEHIEQRQLIRHLTELQYTRNELDLVRGSFRVRGEVVDVFPAESEIEALRIELFDGEIESLSLFDPLTGQTVRKLQR
FSVYPKTHYATTRERTLSAVDTIKDELKEYLELLYGRNKLVEAQRLAQRTQFDLEMMAEVGYCNGIENYSRHLTGKAPGE
PPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVEFGFRLPSALDNRPLRFEEWEVRSPRSIYVSATPGSYE
FRESAGEVIELLVRPTGLIDPEIEIRPVATQVDDLISQINACIKLGDRVLVTTLTKRMAENLTEYLSEQGIRIRYLHSEI
DTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAARSVRGRAILYADKVTRS
MRAAIDETERRRQKQKEYNAENGIVPKSVVRPISDILEGARDGVEVKSKGKGRRVDEVPADYGALNQAEIAAQMKVLEQQ
MYQHARDLEFEDAARIRDQIQRLREAGLG

Nucleotide


Download         Length: 2010 bp        

>NTDB_id=554840 LZ756_RS06725 WP_020851615.1 1440405..1442414(+) (uvrB) [Xylella fastidiosa subsp. sandyi strain OC8]
ATGACAGGTTTTTTTCAGCTTGTTTCTTCATACTCTCCTTCTGGGGATCAGCCTGCGGCTGTACAGAAGCTAGTCACTAA
TTTTCATGCTGGCATTGCTAAGCAGGTGTTGCTTGGCGTTACTGGTTCTGGGAAGACTTACACCATCGCTAATGTGGTTG
AGCAGATTCAGAAGCCAACTCTGGTGATGGCGCCAAACAAGACGTTGGCAGCACAGCTTTACGGGGAATTCAAGGCGTTC
TTCCCGCACAATGCGGTGGAATATTTTGTCAGCTACTATGACTACTATCAGCCTGAGGCGTATGTTCCAGCCTCGGACAC
GTTCATTGAAAAGGACAGTTCTATCAATGAATACATTGAACAGATGCGTTTGGCTGCAACGAAGGCTTTGCTGTCACGTT
CTGATGTGTTGGTGGTGGCGACCGTGTCGGCGATTTATGGTTTGGGTGCGCCTGAGGATTATCTTTCGTTACGTTTGATT
TTGTCGCTGGGTGAGCATATTGAGCAGCGGCAATTGATCAGGCATCTCACTGAGTTGCAGTACACACGTAACGAGTTGGA
TTTGGTGCGTGGTAGTTTCCGTGTACGTGGTGAGGTTGTTGATGTATTCCCGGCTGAGTCAGAGATTGAGGCGCTGCGCA
TTGAGTTGTTTGATGGTGAGATAGAAAGTTTGAGCTTGTTCGATCCGCTTACCGGTCAGACGGTACGTAAGTTGCAACGT
TTTAGTGTTTACCCTAAAACCCACTATGCAACTACGCGTGAACGTACGCTCAGTGCCGTTGATACGATCAAGGATGAGCT
GAAAGAGTATCTAGAACTTCTGTATGGGCGGAATAAGTTGGTTGAGGCGCAACGTTTAGCTCAGCGTACTCAGTTCGACT
TAGAGATGATGGCCGAGGTTGGTTATTGCAATGGTATTGAAAATTACTCTCGTCACTTAACTGGTAAGGCTCCGGGGGAA
CCTCCACCGACGTTGTTCGATTATCTTCCTCCGGATGCGCTACTGGTCATTGATGAGTCGCACGTGACAATTCCGCAGAT
CGGTGCGATGTTCAAGGGGGACCGTTCCCGTAAAGAAACGCTGGTGGAATTTGGTTTCCGTTTACCATCGGCGTTAGACA
ATCGGCCGCTTCGCTTTGAGGAATGGGAAGTGCGTTCGCCGCGTAGCATTTACGTCTCGGCGACTCCAGGATCATATGAG
TTCCGCGAGTCCGCGGGTGAAGTCATAGAGTTGCTGGTGCGTCCGACCGGCTTGATTGATCCTGAGATAGAAATCCGTCC
GGTTGCGACGCAGGTGGATGATCTGATTTCCCAGATCAATGCGTGTATCAAGTTAGGTGATCGGGTTTTGGTCACCACGT
TAACTAAGCGTATGGCTGAGAACCTCACTGAATATTTGAGCGAGCAGGGTATCCGGATACGTTATTTGCATTCGGAAATC
GATACGGTAGAACGTGTGGAGATCATCCGTGATTTGCGTCTTGGTAAATTCGATGTGCTGGTTGGTATCAACCTCCTACG
TGAGGGATTGGATATGCCGGAGGTGTCGTTGGTGGCCATTCTTGACGCTGATAAAGAGGGGTTTTTGCGTTCGACCAGTT
CACTGATTCAGACGATTGGTCGTGCCGCACGCAGTGTGCGCGGTAGGGCAATCTTGTATGCCGATAAAGTGACTCGTTCA
ATGCGCGCTGCAATTGATGAAACCGAGCGACGTCGACAAAAGCAGAAGGAATACAATGCTGAGAACGGTATTGTTCCGAA
ATCCGTTGTACGGCCCATTAGCGACATTTTGGAGGGTGCGCGAGATGGTGTCGAGGTGAAGAGCAAGGGGAAGGGGCGCA
GAGTTGATGAGGTTCCCGCTGACTATGGTGCGCTTAATCAAGCTGAGATTGCCGCGCAGATGAAAGTGCTGGAGCAACAG
ATGTACCAGCATGCGCGTGATTTGGAGTTTGAGGATGCGGCGCGTATTCGCGATCAAATTCAGCGGCTTAGGGAGGCTGG
TCTGGGTTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(552-593)

UvrB interaction domain (UvrB_inter)

(160-249)

Type III restriction enzyme, res subunit (ResIII)

(16-92)

Helicase conserved C-terminal domain (Helicase_C)

(441-544)

UvrB/uvrC motif (UVR)

(635-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.183

98.057

0.541
  uvrB Streptococcus pneumoniae R6

55.03

98.057

0.54
  uvrB Streptococcus pneumoniae D39

55.03

98.057

0.54