Detailed information NTG0554839

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: LZ756_RS06560
• Genome accession: NZ_CP090547
• Coordinates: 1406236..1407381 (-)
• Length: 381 a.a.
• NCBI ID: WP_020851583.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. sandyi strain OC8
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1401236..1412381

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZ756_RS06545 (LZ756_06545)	-	1401630..1402193 (-)	564	WP_024749243.1	Sua5/YciO/YrdC/YwlC family protein	-
LZ756_RS06550 (LZ756_06550)	-	1402307..1404754 (-)	2448	WP_020851581.1	DNA topoisomerase I	-
LZ756_RS06555 (LZ756_06555)	-	1405717..1406190 (-)	474	WP_004089636.1	DUF494 family protein	-
LZ756_RS06560 (LZ756_06560)	dprA	1406236..1407381 (-)	1146	WP_020851583.1	DNA-processing protein DprA	Machinery gene
LZ756_RS06565 (LZ756_06565)	-	1407472..1408626 (-)	1155	WP_020851584.1	LysM peptidoglycan-binding domain-containing protein	-
LZ756_RS06570 (LZ756_06570)	def	1408765..1409277 (+)	513	WP_020851585.1	peptide deformylase	-
LZ756_RS06575 (LZ756_06575)	fmt	1409383..1410306 (+)	924	WP_020851586.1	methionyl-tRNA formyltransferase	-
LZ756_RS06580 (LZ756_06580)	rsmB	1410303..1411592 (+)	1290	WP_020851587.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 40341.12 Da
• Isoelectric Point: 8.3549

>NTDB_id=554839 LZ756_RS06560 WP_020851583.1 1406236..1407381(-) (dprA) [Xylella fastidiosa subsp. sandyi strain OC8]
MASPSHSDSQDTDALLRLVLAGGRSAPRRQLLDYHGTPHAALAAGPNAWRASGCNTMQCTRLVAPDPNAMARIQHWLATP
YHHLLGWHDPDYPPLLRHVPSPPLALFIAGNPILLWHASIAIVGSRQPSAGGLDHSYGFAQALAARGLGIISGMAAGIDA
TAHEAALSIPSGHTVAVLGTGPDVPYPARHKKLHARITTDGAVISEYPPGTQPRAAHFPQRNRIIAGLALGTLVVEAGAR
SGALITARLAAEAGRAVFAVPGSLHNPMTRGCHQLIRQGATLVQDIDQILEDVATLAAPLAHTLRERLDAPSWPGAPLLS
TPNSKDPKYHTLWQALAHDPMSMDSLIDRTGLTAATLSSMLLTLELEGKVVVEHGRYTRTA

Nucleotide

• Length: 1146 bp

>NTDB_id=554839 LZ756_RS06560 WP_020851583.1 1406236..1407381(-) (dprA) [Xylella fastidiosa subsp. sandyi strain OC8]
ATGGCATCCCCATCCCACTCAGACTCCCAAGACACGGACGCGCTGCTACGACTGGTCCTCGCCGGAGGCAGAAGCGCACC
GCGGCGCCAACTACTGGATTACCACGGCACGCCACACGCCGCATTGGCCGCCGGTCCAAATGCTTGGCGCGCCAGTGGCT
GTAACACAATGCAGTGCACCCGCCTAGTTGCTCCCGATCCCAATGCAATGGCACGCATACAACACTGGTTGGCAACGCCT
TACCATCACCTTCTCGGCTGGCACGATCCGGATTACCCGCCATTACTGCGTCATGTCCCTTCGCCACCCTTAGCATTGTT
CATCGCAGGAAATCCAATACTGCTATGGCACGCCAGCATTGCCATCGTCGGCAGCCGCCAGCCCAGTGCCGGCGGCCTTG
ATCATTCCTATGGCTTCGCACAGGCATTAGCGGCACGCGGCCTGGGCATCATCAGCGGAATGGCAGCCGGAATCGACGCT
ACAGCACACGAAGCCGCACTCAGCATACCCAGTGGGCATACGGTCGCAGTGCTTGGTACGGGCCCAGATGTGCCATACCC
AGCACGTCACAAAAAACTGCACGCACGTATCACCACAGACGGAGCGGTCATCAGCGAATATCCACCAGGAACCCAACCAC
GGGCTGCCCACTTTCCACAACGCAACAGGATTATTGCAGGCTTGGCGCTGGGCACACTGGTGGTCGAAGCTGGAGCGCGT
TCCGGCGCACTGATCACCGCTCGACTGGCAGCAGAAGCAGGGCGTGCTGTATTCGCAGTGCCAGGATCGCTACACAACCC
TATGACACGCGGCTGCCACCAGTTGATCCGTCAAGGCGCAACACTGGTTCAAGACATAGACCAAATATTGGAGGACGTCG
CTACGCTAGCAGCGCCGTTAGCACACACCTTGCGTGAGCGCCTTGATGCTCCCAGTTGGCCTGGGGCGCCATTATTAAGC
ACACCAAACAGTAAAGACCCTAAATACCACACACTTTGGCAGGCCCTTGCACATGACCCAATGTCCATGGACTCATTAAT
TGACCGTACTGGATTGACGGCAGCCACACTCTCCTCCATGCTTCTAACCTTGGAACTGGAAGGAAAGGTTGTCGTAGAAC
ACGGACGTTATACACGTACCGCTTAG

Domains

Predicted by InterProScan.

• DprA winged helix domain (WHD_DprA) (321-375)

• DNA recombination-mediator protein A (DNA_processg_A) (83-284)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Vibrio cholerae O1 biovar El Tor strain E7946	41.176	89.239	0.367
dprA	Vibrio cholerae strain A1552	41.176	89.239	0.367
dprA	Acinetobacter baumannii D1279779	37.602	96.325	0.362