Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   LZ753_RS09270 Genome accession   NZ_CP090514
Coordinates   2035711..2037720 (-) Length   669 a.a.
NCBI ID   WP_004089700.1    Uniprot ID   Q87AT6
Organism   Xylella fastidiosa subsp. fastidiosa strain Riv13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2030711..2042720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ753_RS09235 (LZ753_09235) - 2031965..2032243 (+) 279 WP_011097962.1 VRR-NUC domain-containing protein -
  LZ753_RS09240 (LZ753_09240) - 2032245..2032529 (-) 285 WP_011098229.1 DUF1640 domain-containing protein -
  LZ753_RS09245 (LZ753_09245) - 2032614..2034032 (+) 1419 WP_011098230.1 DEAD/DEAH box helicase -
  LZ753_RS09250 (LZ753_09250) - 2034029..2034268 (+) 240 WP_011098231.1 hypothetical protein -
  LZ753_RS09255 (LZ753_09255) - 2034255..2034578 (+) 324 WP_004089706.1 helix-turn-helix domain-containing protein -
  LZ753_RS09260 (LZ753_09260) - 2034905..2035525 (+) 621 WP_014607459.1 tyrosine-type recombinase/integrase -
  LZ753_RS09270 (LZ753_09270) uvrB 2035711..2037720 (-) 2010 WP_004089700.1 excinuclease ABC subunit UvrB Machinery gene
  LZ753_RS09275 (LZ753_09275) - 2037875..2038462 (+) 588 WP_011098232.1 Tfp pilus assembly protein FimT/FimU -
  LZ753_RS09280 (LZ753_09280) - 2038920..2039426 (-) 507 WP_004089696.1 hypothetical protein -
  LZ753_RS09285 (LZ753_09285) dapA 2039446..2040354 (-) 909 WP_004089694.1 4-hydroxy-tetrahydrodipicolinate synthase -
  LZ753_RS09290 (LZ753_09290) - 2040507..2041082 (+) 576 WP_011098233.1 glycine cleavage system protein R -
  LZ753_RS09295 (LZ753_09295) - 2041129..2041608 (+) 480 WP_004089690.1 peroxiredoxin -

Sequence

Protein


Download         Length: 669 a.a.        Molecular weight: 75438.07 Da        Isoelectric Point: 5.2614

>NTDB_id=554734 LZ753_RS09270 WP_004089700.1 2035711..2037720(-) (uvrB) [Xylella fastidiosa subsp. fastidiosa strain Riv13]
MTGLFQLVSSYSPSGDQPAAVQKLVTNFHAGIAKQVLLGVTGSGKTYTIANVVEQIQKPTLVMAPNKTLAAQLYGEFKAF
FPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSSINEYIEQMRLAATKALLSRSDVLVVATVSAIYGLGAPEDYLSLRLI
LSLGEHIEQRQLIRHLTELQYTRNELDLVRGSFRVRGEVVDVFPAESEMEALRIELFDGEIESLSLFDPLTGQTVRKLQR
FSVYPKTHYATTRERTLSAVDTIKDELKEYLELLYGRNKLVEAQRLAQRTQFDLEMMAEVGYCNGIENYSRHLTGKAPGE
PPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVEFGFRLPSALDNRPLRFEEWEVRSPRSIYVSATPGSYE
FRESAGEVIELLVRPTGLIDPEIEIRPVATQVDDLISQINACIKLGDRVLVTTLTKRMAENLTEYLSEQGIRIRYLHSEI
DTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAARSVRGRAILYADKVTRS
MRAAIDETERRRQKQKEYNAENGIVPKSVVRPISDILEGARDGVEVKSKGKGRRVDEVPADYGALNQAEIAAQMKVLEQK
MYQHARDLEFEDAARIRDQIQRLREAGLG

Nucleotide


Download         Length: 2010 bp        

>NTDB_id=554734 LZ753_RS09270 WP_004089700.1 2035711..2037720(-) (uvrB) [Xylella fastidiosa subsp. fastidiosa strain Riv13]
ATGACAGGTTTGTTTCAGCTTGTTTCTTCATACTCTCCTTCTGGGGATCAGCCTGCGGCTGTACAGAAGCTAGTCACTAA
TTTCCATGCTGGCATTGCTAAGCAGGTGTTGCTTGGCGTTACTGGTTCTGGGAAGACTTACACCATCGCTAATGTGGTTG
AGCAGATTCAGAAGCCAACTCTGGTGATGGCGCCAAACAAGACGTTGGCAGCACAGCTTTACGGGGAATTCAAGGCGTTC
TTCCCGCACAATGCGGTGGAATATTTTGTCAGCTACTATGACTACTATCAGCCTGAGGCGTATGTTCCAGCCTCGGACAC
GTTCATTGAAAAGGACAGTTCTATCAATGAATACATTGAACAGATGCGTTTGGCTGCAACGAAGGCTTTGCTGTCACGTT
CTGATGTGTTGGTGGTGGCGACCGTGTCGGCGATTTATGGTTTGGGTGCGCCTGAGGATTATCTTTCGTTACGTTTGATT
TTGTCGCTGGGTGAGCATATTGAGCAGCGGCAATTGATCAGGCATCTCACTGAGTTGCAGTACACTCGTAACGAGTTGGA
TTTGGTGCGTGGTAGTTTCCGTGTACGTGGTGAGGTTGTTGATGTATTCCCGGCTGAGTCAGAGATGGAGGCGCTGCGCA
TTGAGTTGTTTGATGGTGAGATAGAAAGTTTGAGCTTGTTCGATCCGCTTACCGGTCAGACGGTACGTAAGTTGCAACGT
TTTAGTGTTTACCCTAAAACCCACTATGCAACTACGCGTGAACGTACGCTCAGTGCCGTTGATACGATCAAGGATGAGCT
GAAAGAGTATCTAGAACTTCTGTATGGGCGGAATAAGTTGGTTGAGGCGCAACGTTTAGCTCAGCGTACTCAGTTCGACT
TAGAGATGATGGCCGAGGTTGGTTATTGCAATGGTATTGAAAATTACTCTCGTCACTTAACTGGTAAGGCTCCGGGGGAA
CCTCCACCGACGTTGTTCGATTATCTTCCTCCGGATGCGCTACTGGTCATTGATGAGTCGCATGTGACAATTCCGCAGAT
CGGTGCGATGTTCAAGGGGGACCGTTCCCGTAAAGAAACGCTGGTGGAATTTGGTTTCCGTTTACCATCGGCGTTAGACA
ATCGACCGCTTCGCTTTGAGGAATGGGAAGTGCGTTCGCCGCGTAGCATTTACGTCTCGGCGACTCCAGGATCATATGAG
TTCCGCGAGTCCGCGGGTGAAGTCATAGAGTTGCTGGTGCGTCCGACCGGCTTGATTGATCCTGAGATAGAAATCCGTCC
GGTTGCGACGCAGGTGGATGATCTGATTTCCCAGATCAATGCGTGTATCAAGTTAGGTGATCGGGTTTTGGTCACCACGT
TAACTAAGCGTATGGCTGAGAACCTCACTGAATATTTGAGCGAGCAGGGTATCCGGATACGTTATTTGCATTCGGAAATC
GATACGGTAGAACGTGTGGAGATCATCCGTGATTTGCGTCTTGGTAAATTCGATGTGCTGGTTGGTATCAACCTTCTACG
TGAGGGATTGGATATGCCGGAGGTGTCGTTGGTGGCCATTCTTGACGCTGATAAAGAGGGGTTTTTGCGTTCGACCAGTT
CACTGATTCAGACGATTGGTCGTGCCGCACGCAGTGTGCGCGGTAGGGCAATCTTGTATGCCGATAAAGTGACTCGTTCA
ATGCGCGCTGCAATTGATGAAACCGAGCGACGTCGACAAAAGCAGAAGGAATACAATGCTGAGAACGGTATTGTTCCGAA
ATCCGTTGTACGGCCCATTAGCGACATTTTGGAGGGTGCGCGAGATGGTGTCGAGGTGAAGAGCAAGGGGAAGGGGCGCA
GAGTTGATGAGGTTCCCGCTGACTATGGTGCGCTTAATCAAGCTGAGATTGCCGCACAGATGAAAGTGCTGGAGCAAAAG
ATGTACCAGCATGCGCGTGATTTGGAGTTTGAGGATGCGGCGCGTATTCGCGATCAAATTCAGCGGCTTAGGGAGGCTGG
TCTGGGTTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(552-593)

Type III restriction enzyme, res subunit (ResIII)

(16-92)

UvrB/uvrC motif (UVR)

(635-665)

UvrB interaction domain (UvrB_inter)

(160-249)

Helicase conserved C-terminal domain (Helicase_C)

(441-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87AT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.03

98.057

0.54
  uvrB Streptococcus pneumoniae R6

54.878

98.057

0.538
  uvrB Streptococcus pneumoniae D39

54.878

98.057

0.538