Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   J5226_RS09715 Genome accession   NZ_CP072597
Coordinates   2250688..2251956 (-) Length   422 a.a.
NCBI ID   WP_215839712.1    Uniprot ID   -
Organism   Lysobacter sp. K5869     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2245688..2256956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5226_RS09700 (J5226_09700) - 2247677..2248744 (+) 1068 WP_215839709.1 Nudix family hydrolase -
  J5226_RS09705 (J5226_09705) coaE 2249162..2249776 (-) 615 WP_215839710.1 dephospho-CoA kinase -
  J5226_RS09710 (J5226_09710) - 2249781..2250668 (-) 888 WP_215839711.1 A24 family peptidase -
  J5226_RS09715 (J5226_09715) pilC 2250688..2251956 (-) 1269 WP_215839712.1 type II secretion system F family protein Machinery gene
  J5226_RS09720 (J5226_09720) pilB 2251960..2253687 (-) 1728 WP_215839713.1 type IV-A pilus assembly ATPase PilB Machinery gene
  J5226_RS09725 (J5226_09725) - 2253822..2254676 (+) 855 WP_215839714.1 glycosyltransferase family 2 protein -
  J5226_RS09730 (J5226_09730) - 2254681..2255763 (+) 1083 WP_215839715.1 UDP-N-acetylglucosamine 2-epimerase -
  J5226_RS09735 (J5226_09735) - 2255846..2256769 (+) 924 WP_215839716.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46021.39 Da        Isoelectric Point: 10.1909

>NTDB_id=554459 J5226_RS09715 WP_215839712.1 2250688..2251956(-) (pilC) [Lysobacter sp. K5869]
MSATRSATRAATKTAPPVRRENPLEMFVWQGTDKRGITMKGEQAAKNANLLRAELRRQGITPNVVKPKGKPLFGASGQRI
TPGDIAIFSRQIATMMKSGVPIVTSLEIIGEGHKNPRMKKLLNAIRADLESGLSLYEAMSKHPVQFDELYRNLVKAGESA
GVLETVLDTVATYKENIETLKGKIKKALFYPATVVAVAILVSAILLIFVVPQFQQTFKSFGADLPAFTLMVIGMSDFMIQ
WWWAILLLTIGAAVAFIMAKNRSPGFAHFLDRAMLKIPVVGQILHNAAIARFARTLAVTFRAGVPLVEALDTVAGATGNV
VYEKAVYRIRDDVSVGYQVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMIIL
GVIVGGMVVAMYLPIFKLAATI

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=554459 J5226_RS09715 WP_215839712.1 2250688..2251956(-) (pilC) [Lysobacter sp. K5869]
ATGTCCGCGACCCGATCCGCCACTCGCGCCGCCACCAAGACCGCCCCCCCGGTTCGCCGCGAAAATCCCCTGGAAATGTT
CGTCTGGCAGGGCACCGACAAGCGCGGCATCACGATGAAGGGCGAGCAGGCGGCCAAGAACGCCAACCTGCTGCGCGCCG
AACTGCGCCGCCAGGGCATCACGCCCAACGTGGTCAAGCCCAAGGGCAAGCCGCTGTTCGGCGCTTCCGGCCAGCGCATC
ACCCCGGGCGACATCGCCATCTTCAGCCGCCAGATCGCCACGATGATGAAGTCGGGCGTGCCGATCGTGACCTCGCTGGA
GATCATCGGCGAGGGCCACAAGAACCCGCGCATGAAGAAGCTGCTCAACGCGATCCGCGCGGACCTGGAAAGCGGTCTGT
CGCTGTACGAGGCGATGAGCAAGCACCCGGTGCAGTTCGACGAGCTCTACCGCAATCTGGTCAAGGCCGGCGAATCGGCC
GGTGTGCTGGAAACCGTGCTCGACACGGTCGCGACCTACAAAGAAAACATCGAAACCCTCAAGGGCAAGATCAAGAAGGC
CTTGTTCTACCCGGCCACCGTGGTCGCGGTGGCGATCCTGGTCAGCGCGATCCTGCTGATCTTCGTGGTGCCGCAGTTCC
AGCAGACCTTCAAGAGCTTCGGCGCCGACTTGCCGGCCTTCACCTTGATGGTGATCGGCATGAGCGACTTCATGATCCAG
TGGTGGTGGGCGATCTTGCTGCTGACCATCGGCGCGGCGGTGGCCTTCATCATGGCCAAGAACCGCTCGCCGGGCTTCGC
CCACTTCCTCGACCGCGCGATGCTCAAGATCCCGGTCGTCGGCCAGATCCTGCACAACGCCGCGATTGCCCGCTTCGCCC
GCACCCTGGCGGTGACCTTCCGCGCCGGCGTGCCGCTGGTGGAAGCGCTCGACACCGTCGCCGGCGCCACCGGCAACGTG
GTCTACGAGAAGGCGGTCTACCGCATCCGCGACGACGTCTCGGTGGGTTATCAGGTCAACATGGCGATGAAGCAGGTCAA
CCTGTTCCCGCACATGGTGGTGCAGATGACCGCGATCGGCGAAGAAGCCGGCGCGCTCGACACCATGCTGGTCAAGGTCG
CCGAGTTCTACGAGCAGGAGGTCAACAACGCGGTCGACGCGCTGTCGAGCCTGCTGGAACCGCTGATCATGATCATCCTC
GGCGTCATCGTCGGCGGCATGGTGGTGGCGATGTATCTGCCGATCTTCAAGCTGGCAGCGACGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(292-414)

Type II secretion system (T2SS), protein F (T2SSF)

(88-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

56.436

95.735

0.54
  pilC Pseudomonas stutzeri DSM 10701

55.919

94.076

0.526
  pilC Acinetobacter baylyi ADP1

51.97

96.209

0.5
  pilC Acinetobacter baumannii D1279779

50.985

96.209

0.491
  pilG Neisseria gonorrhoeae MS11

42.893

95.024

0.408
  pilG Neisseria meningitidis 44/76-A

42.893

95.024

0.408
  pilC Vibrio campbellii strain DS40M4

41.103

94.55

0.389
  pilC Vibrio cholerae strain A1552

40.25

94.787

0.382
  pilC Thermus thermophilus HB27

36.73

100

0.367