Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   J6600_RS16690 Genome accession   NZ_CP072563
Coordinates   3423178..3423867 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. LJBV19     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3418178..3428867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6600_RS16655 (J6600_16655) - 3418376..3418858 (-) 483 WP_022553865.1 flagellar protein FlgN -
  J6600_RS16660 (J6600_16660) flgM 3418873..3419139 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  J6600_RS16665 (J6600_16665) - 3419209..3419628 (-) 420 WP_209387641.1 TIGR03826 family flagellar region protein -
  J6600_RS16670 (J6600_16670) comFC 3419702..3420391 (-) 690 WP_209388365.1 phosphoribosyltransferase family protein Machinery gene
  J6600_RS16675 (J6600_16675) - 3420397..3420681 (-) 285 WP_209387642.1 late competence development ComFB family protein -
  J6600_RS16680 (J6600_16680) comFA 3420739..3422124 (-) 1386 WP_209387643.1 DEAD/DEAH box helicase Machinery gene
  J6600_RS16685 (J6600_16685) - 3422232..3423080 (-) 849 WP_003151387.1 DegV family protein -
  J6600_RS16690 (J6600_16690) degU 3423178..3423867 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  J6600_RS16695 (J6600_16695) degS 3423944..3425107 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  J6600_RS16700 (J6600_16700) - 3425330..3425977 (+) 648 WP_007614107.1 YigZ family protein -
  J6600_RS16705 (J6600_16705) - 3425982..3427136 (+) 1155 WP_209387644.1 LCP family protein -
  J6600_RS16710 (J6600_16710) - 3427235..3428311 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=554261 J6600_RS16690 WP_003219701.1 3423178..3423867(-) (degU) [Bacillus sp. LJBV19]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=554261 J6600_RS16690 WP_003219701.1 3423178..3423867(-) (degU) [Bacillus sp. LJBV19]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGTGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAAAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1