Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   J6600_RS16680 Genome accession   NZ_CP072563
Coordinates   3420739..3422124 (-) Length   461 a.a.
NCBI ID   WP_209387643.1    Uniprot ID   -
Organism   Bacillus sp. LJBV19     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3415739..3427124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6600_RS16645 (J6600_16645) flgL 3415914..3416831 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  J6600_RS16650 (J6600_16650) flgK 3416843..3418360 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  J6600_RS16655 (J6600_16655) - 3418376..3418858 (-) 483 WP_022553865.1 flagellar protein FlgN -
  J6600_RS16660 (J6600_16660) flgM 3418873..3419139 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  J6600_RS16665 (J6600_16665) - 3419209..3419628 (-) 420 WP_209387641.1 TIGR03826 family flagellar region protein -
  J6600_RS16670 (J6600_16670) comFC 3419702..3420391 (-) 690 WP_209388365.1 phosphoribosyltransferase family protein Machinery gene
  J6600_RS16675 (J6600_16675) - 3420397..3420681 (-) 285 WP_209387642.1 late competence development ComFB family protein -
  J6600_RS16680 (J6600_16680) comFA 3420739..3422124 (-) 1386 WP_209387643.1 DEAD/DEAH box helicase Machinery gene
  J6600_RS16685 (J6600_16685) - 3422232..3423080 (-) 849 WP_003151387.1 DegV family protein -
  J6600_RS16690 (J6600_16690) degU 3423178..3423867 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  J6600_RS16695 (J6600_16695) degS 3423944..3425107 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  J6600_RS16700 (J6600_16700) - 3425330..3425977 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52734.25 Da        Isoelectric Point: 10.2872

>NTDB_id=554260 J6600_RS16680 WP_209387643.1 3420739..3422124(-) (comFA) [Bacillus sp. LJBV19]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYYWNQAPENSWELVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQLQLPVFLFVPSVHVLKKTTDYFRKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTVLERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=554260 J6600_RS16680 WP_209387643.1 3420739..3422124(-) (comFA) [Bacillus sp. LJBV19]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTATTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCTTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTTTTAGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAAGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTATCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGAAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCGGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGGTTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACCGAGAGCGCGCTCGTGCAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(330-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.174

99.783

0.62