Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   J7649_RS08135 Genome accession   NZ_CP072549
Coordinates   1727716..1728573 (-) Length   285 a.a.
NCBI ID   WP_219307337.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain H7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1722716..1733573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7649_RS08120 (J7649_08120) miaB 1724455..1725912 (+) 1458 WP_071850832.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  J7649_RS08125 (J7649_08125) - 1725950..1727026 (+) 1077 WP_219307325.1 PhoH family protein -
  J7649_RS08130 (J7649_08130) ybeY 1727049..1727531 (+) 483 WP_219307335.1 rRNA maturation RNase YbeY -
  J7649_RS08135 (J7649_08135) tonB2 1727716..1728573 (-) 858 WP_219307337.1 energy transducer TonB Machinery gene
  J7649_RS08140 (J7649_08140) - 1728837..1729523 (+) 687 WP_219307339.1 hypothetical protein -
  J7649_RS08145 (J7649_08145) - 1729683..1730396 (+) 714 WP_071850839.1 DUF3108 domain-containing protein -
  J7649_RS08150 (J7649_08150) - 1730485..1731060 (+) 576 WP_005094083.1 xanthine phosphoribosyltransferase -
  J7649_RS08155 (J7649_08155) - 1731372..1732046 (-) 675 WP_005101144.1 hypothetical protein -
  J7649_RS08160 (J7649_08160) - 1732131..1733336 (-) 1206 WP_219307350.1 CsgG/HfaB family protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32567.98 Da        Isoelectric Point: 5.8012

>NTDB_id=554118 J7649_RS08135 WP_219307337.1 1727716..1728573(-) (tonB2) [Acinetobacter lwoffii strain H7]
MSLVRTWWKDPVFSSAVVAAGILHLIVLTLEFGMPQDLDTSTKEIAVSLRQTDEKIEHADFLAQTDQQGSGQFREAHRMS
SDMPSPLMEQQAGEELEKSLDMLQQQQQLSFEEKVLMTTLSWQKQAEENQRKKMQEQLQSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDVSAAYLEKFREKVEFYGNRYYPEAAKQQNLAGEVRLMVILNQNGGIRAIRLIDSSGHAML
DEAAKASVRKAAPFGAFDSKMKEISELRVIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=554118 J7649_RS08135 WP_219307337.1 1727716..1728573(-) (tonB2) [Acinetobacter lwoffii strain H7]
ATGTCTCTGGTCAGAACTTGGTGGAAAGATCCAGTGTTTAGCAGTGCGGTGGTTGCCGCAGGCATTCTGCATTTGATCGT
GCTGACACTGGAATTTGGTATGCCACAAGATCTGGATACCAGCACCAAAGAAATTGCGGTCAGCTTGCGCCAGACTGATG
AAAAAATTGAGCATGCCGATTTTCTGGCCCAGACAGACCAGCAGGGTTCCGGTCAGTTTAGAGAGGCGCATCGCATGTCG
AGTGATATGCCCTCGCCATTAATGGAACAGCAGGCAGGTGAAGAGCTGGAAAAAAGTCTGGATATGCTGCAACAGCAACA
ACAGCTCAGTTTTGAAGAAAAGGTCCTGATGACCACTTTGAGCTGGCAAAAGCAGGCGGAGGAAAATCAGCGTAAAAAAA
TGCAGGAGCAATTACAAAGCCAGTTTCAGGCCAAAGCGGCCATGGTCGCCAGTCTGGAAGCGCAATATTTACAGCGTCAA
CAAAATTTCAGTCGTCAGCAAAAAATTAAAACTGTAGATGGGATTCAGGCCAAGCAGGATGTTTCGGCCGCCTATCTGGA
AAAGTTCCGCGAGAAAGTGGAATTCTATGGGAACCGTTATTATCCGGAAGCCGCCAAACAACAGAATCTGGCAGGGGAAG
TGCGGCTGATGGTAATCCTGAACCAGAATGGCGGAATTCGTGCCATTCGGCTGATTGACAGTTCGGGACATGCCATGCTG
GACGAAGCAGCCAAAGCTTCCGTGCGTAAGGCAGCCCCATTTGGTGCTTTCGACAGTAAAATGAAAGAAATTTCCGAACT
GCGAGTGATTCGTACCTGGCGTTTTGACCCGGCAGAAGCGGAGTTTGAGGTACGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.118

97.895

0.716