Detailed information NTG0055401

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PSEST_RS08165
• Genome accession: NC_019936
• Coordinates: 1779258..1781483 (+)
• Length: 741 a.a.
• NCBI ID: WP_015276527.1
• Uniprot ID: L0GJN6
• Organism: Stutzerimonas stutzeri RCH2
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1774258..1786483

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSEST_RS08135 (Psest_1665)	-	1774414..1774722 (-)	309	WP_015276521.1	hypothetical protein	-
PSEST_RS08140 (Psest_1666)	-	1774726..1775361 (-)	636	WP_015276522.1	PilZ domain-containing protein	-
PSEST_RS08145 (Psest_1667)	-	1775394..1776641 (+)	1248	WP_015276523.1	lipoprotein-releasing ABC transporter permease subunit	-
PSEST_RS08150 (Psest_1668)	lolD	1776649..1777344 (+)	696	WP_041756548.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
PSEST_RS08155 (Psest_1669)	-	1777344..1778588 (+)	1245	WP_041756550.1	lipoprotein-releasing ABC transporter permease subunit	-
PSEST_RS08160 (Psest_1670)	-	1778594..1779109 (-)	516	WP_015276526.1	DUF2062 domain-containing protein	-
PSEST_RS08165 (Psest_1671)	comA	1779258..1781483 (+)	2226	WP_015276527.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PSEST_RS08170 (Psest_1672)	-	1781555..1782187 (+)	633	WP_015276528.1	MotA/TolQ/ExbB proton channel family protein	-
PSEST_RS08175 (Psest_1673)	-	1782184..1782612 (+)	429	WP_015276529.1	ExbD/TolR family protein	-
PSEST_RS08180 (Psest_1674)	lpxK	1782612..1783616 (+)	1005	WP_015276530.1	tetraacyldisaccharide 4'-kinase	-
PSEST_RS08185 (Psest_1675)	-	1783662..1783847 (+)	186	WP_003299639.1	Trm112 family protein	-
PSEST_RS08190 (Psest_1676)	kdsB	1783844..1784608 (+)	765	WP_015276531.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PSEST_RS08195 (Psest_1677)	-	1784610..1785077 (+)	468	WP_015276532.1	low molecular weight protein-tyrosine-phosphatase	-
PSEST_RS08200 (Psest_1678)	murB	1785074..1786093 (+)	1020	WP_015276533.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 80788.75 Da
• Isoelectric Point: 10.1930

>NTDB_id=55401 PSEST_RS08165 WP_015276527.1 1779258..1781483(+) (comA) [Stutzerimonas stutzeri RCH2]
MRTWMLALAAGLVLPRFLPALPASWICAAFAAVGALMLMRRSWVPFGLFLLGLGWACYQSQNALADRLPVAMDGRTFWIE
GRVVDLPAAIGDVVRFELADIESRHVGLPSKVRLSWYGGPQLRAGERWRLAVRLKRPRGLVNPQSFDYEAWLLARGIGAT
GTVKAGERLSASVATDGWRDRLRARLMAVPAFDRQGAIAALVVGDDSGLRRSDWQVLQDTGTVHLMVISGQHIGMLAGLL
YGLVALLARLGVWPRPWPWLPCACGLALAGALSYGWLAGFDVPVRRACFMVAVVLLWRLRFRHLGVWQPLLLALNGVLLI
DPLVTLQPGFWLSFGAVAVLALAFAGRLGRWIWWKTLLRAQWAATLGLLPLLLALGLPVSASSPLANLIAVPWVSLTVPF
ALLGTILLPLGGVGEAILWLVGGSLALLFELLGLIASWRPAWFAVGLPCWVFLMIALGVLLLLMPAGIPLRALGVMLLLP
LAFPPRMEVPEGRAQVWVLDVGQGLSVLVRTREHALLYDAGPRQGDFDAGERVVFPSIRSLAVSRLDMLLLSHADNDHSG
GAQAVQHLMPVARIISGEPQRHADGLNAEPCESGAQWQWNGVRFTLWQWQAARESNQLSCVLLVEANGERLLLTGDIDQA
AEQALLRSGTEVQAQWLLLPHHGSRSSSSESFLRAVEPTTALISRSFHNAFGHPHPSVTTRLAALGVGTYDTALHGAIRI
DLGDFSAAEARRAGRRFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=55401 PSEST_RS08165 WP_015276527.1 1779258..1781483(+) (comA) [Stutzerimonas stutzeri RCH2]
ATGCGCACATGGATGCTGGCGCTTGCCGCCGGCCTTGTTCTCCCTCGCTTTCTGCCGGCTCTGCCTGCGAGCTGGATCTG
CGCAGCATTTGCCGCGGTAGGTGCGCTGATGCTTATGCGCAGGAGCTGGGTCCCGTTTGGCTTGTTCCTCCTTGGTTTGG
GCTGGGCCTGTTATCAAAGCCAGAACGCCCTTGCTGACCGCCTGCCCGTAGCGATGGATGGCCGCACGTTCTGGATCGAA
GGGCGGGTGGTCGACCTGCCTGCTGCGATTGGCGACGTGGTGCGCTTCGAGCTCGCCGATATCGAGTCGCGACATGTCGG
GTTGCCTTCTAAAGTTCGCCTTTCCTGGTACGGCGGCCCGCAACTGCGGGCCGGTGAGCGTTGGCGGCTGGCGGTACGGT
TGAAGCGTCCGCGCGGCCTGGTCAACCCGCAATCGTTCGACTACGAAGCCTGGCTGCTGGCGCGTGGTATTGGCGCCACC
GGCACCGTCAAGGCTGGGGAGCGTCTCTCGGCTTCGGTTGCCACCGACGGCTGGCGTGACCGGCTGCGGGCGCGCCTGAT
GGCTGTTCCGGCGTTCGATCGGCAGGGCGCGATCGCCGCGCTGGTGGTGGGGGATGACTCAGGTTTGCGTCGCAGCGATT
GGCAGGTGCTGCAGGACACCGGCACCGTGCACCTGATGGTCATCTCCGGACAGCATATCGGCATGCTCGCGGGGTTACTG
TACGGATTGGTCGCCTTGCTGGCGAGGTTGGGCGTCTGGCCGCGGCCCTGGCCATGGCTACCTTGCGCGTGCGGGTTGGC
GCTTGCTGGCGCCCTTTCTTACGGATGGCTCGCAGGCTTTGACGTTCCGGTTCGCCGTGCCTGCTTCATGGTTGCGGTGG
TGTTGCTCTGGCGCTTGCGTTTCCGGCATCTGGGCGTCTGGCAGCCGCTGCTGCTTGCGCTCAATGGTGTTCTGCTGATC
GATCCGCTGGTGACGCTGCAGCCAGGGTTTTGGCTATCGTTCGGAGCGGTTGCGGTGCTGGCGCTGGCCTTCGCTGGCAG
ACTTGGCCGGTGGATTTGGTGGAAGACGCTGCTACGGGCCCAATGGGCCGCGACTCTAGGCCTGCTTCCTTTGTTGCTGG
CGCTGGGGCTACCGGTCAGCGCCAGCAGTCCGCTGGCCAACTTGATCGCGGTGCCCTGGGTAAGCCTGACGGTTCCCTTT
GCGCTGCTCGGCACGATCCTGCTGCCGCTGGGGGGCGTAGGTGAAGCGATTTTGTGGCTGGTGGGCGGCTCTCTGGCTCT
GCTGTTCGAACTGCTGGGCCTCATCGCGTCCTGGCGACCAGCCTGGTTTGCCGTTGGCTTACCCTGCTGGGTGTTCTTGA
TGATCGCACTGGGCGTTTTGCTGTTGCTGATGCCTGCCGGCATCCCACTGCGCGCGTTGGGAGTGATGCTGCTGTTGCCC
TTGGCGTTCCCGCCGCGCATGGAGGTGCCGGAGGGCCGTGCGCAGGTGTGGGTGCTGGACGTGGGGCAGGGATTGTCGGT
GCTGGTGCGCACGCGAGAGCACGCGCTGCTCTACGATGCCGGTCCGCGGCAGGGCGACTTCGATGCCGGCGAACGGGTCG
TCTTTCCGTCTATCCGAAGCCTGGCTGTGAGTCGGTTGGATATGCTGCTCCTCAGCCATGCCGACAATGATCATTCAGGC
GGTGCCCAGGCTGTTCAGCACCTGATGCCGGTTGCGCGGATCATTAGCGGAGAGCCGCAACGACATGCGGATGGTCTGAA
TGCAGAGCCGTGTGAGAGTGGTGCGCAGTGGCAGTGGAACGGTGTGCGCTTCACCCTTTGGCAATGGCAGGCCGCGCGTG
AGAGTAATCAGCTGTCATGTGTTCTTCTGGTCGAAGCCAACGGTGAACGCCTCTTGCTGACGGGCGACATAGATCAGGCC
GCGGAGCAGGCGTTGCTACGCAGTGGGACGGAAGTGCAGGCACAATGGTTGCTGCTGCCGCATCATGGCAGTCGCAGCTC
CTCGTCGGAGTCGTTTCTACGTGCGGTGGAACCGACTACGGCGTTGATCTCCCGTAGCTTTCACAATGCCTTCGGACATC
CTCATCCAAGCGTGACCACGCGTCTTGCGGCTCTCGGGGTCGGTACCTACGACACAGCCCTGCATGGCGCAATTCGAATC
GATCTGGGCGATTTCTCGGCGGCCGAGGCGCGGCGTGCGGGACGCCGATTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (201-464)

• Domain of unknown function (DUF4131) (DUF4131) (24-168)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-684)

3D structure

• AlphaFold DB: L0GJN6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	66.246	96.356	0.638
comA	Ralstonia pseudosolanacearum GMI1000	37.027	100	0.383