Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   J7W01_RS18455 Genome accession   NZ_CP072525
Coordinates   3574865..3576022 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain YB-04     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3569865..3581022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7W01_RS18425 (J7W01_18425) yvyF 3570118..3570537 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  J7W01_RS18430 (J7W01_18430) comFC 3570611..3571333 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  J7W01_RS18435 (J7W01_18435) comFB 3571297..3571593 (-) 297 WP_003227989.1 late competence protein ComFB -
  J7W01_RS18440 (J7W01_18440) comFA 3571653..3573044 (-) 1392 WP_041850475.1 ATP-dependent helicase ComFA Machinery gene
  J7W01_RS18445 (J7W01_18445) fakBA 3573150..3573995 (-) 846 WP_003227986.1 DegV family protein -
  J7W01_RS18450 (J7W01_18450) degU 3574093..3574782 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  J7W01_RS18455 (J7W01_18455) degS 3574865..3576022 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  J7W01_RS18460 (J7W01_18460) yvyE 3576239..3576892 (+) 654 WP_003227979.1 YigZ family protein -
  J7W01_RS18465 (J7W01_18465) tagV 3576892..3578076 (+) 1185 WP_041850474.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  J7W01_RS18470 (J7W01_18470) tagO 3578149..3579225 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  J7W01_RS18475 (J7W01_18475) tuaH 3579370..3580563 (-) 1194 WP_080332566.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=554001 J7W01_RS18455 WP_003227983.1 3574865..3576022(-) (degS) [Bacillus subtilis strain YB-04]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=554001 J7W01_RS18455 WP_003227983.1 3574865..3576022(-) (degS) [Bacillus subtilis strain YB-04]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAAGTTTTTCAAATCGGTGAGCAGTCACGCCAGCAGTATGAACAGCTGGTTGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATCGAGCTTGGCGATAAACTTGAAGTGCAAACCCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCAGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1