Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   J7W01_RS18450 Genome accession   NZ_CP072525
Coordinates   3574093..3574782 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain YB-04     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3569093..3579782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7W01_RS18415 (J7W01_18415) flgN 3569273..3569755 (-) 483 WP_014481048.1 flagellar protein FlgN -
  J7W01_RS18420 (J7W01_18420) flgM 3569771..3570037 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  J7W01_RS18425 (J7W01_18425) yvyF 3570118..3570537 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  J7W01_RS18430 (J7W01_18430) comFC 3570611..3571333 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  J7W01_RS18435 (J7W01_18435) comFB 3571297..3571593 (-) 297 WP_003227989.1 late competence protein ComFB -
  J7W01_RS18440 (J7W01_18440) comFA 3571653..3573044 (-) 1392 WP_041850475.1 ATP-dependent helicase ComFA Machinery gene
  J7W01_RS18445 (J7W01_18445) fakBA 3573150..3573995 (-) 846 WP_003227986.1 DegV family protein -
  J7W01_RS18450 (J7W01_18450) degU 3574093..3574782 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  J7W01_RS18455 (J7W01_18455) degS 3574865..3576022 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  J7W01_RS18460 (J7W01_18460) yvyE 3576239..3576892 (+) 654 WP_003227979.1 YigZ family protein -
  J7W01_RS18465 (J7W01_18465) tagV 3576892..3578076 (+) 1185 WP_041850474.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  J7W01_RS18470 (J7W01_18470) tagO 3578149..3579225 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=554000 J7W01_RS18450 WP_003219701.1 3574093..3574782(-) (degU) [Bacillus subtilis strain YB-04]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=554000 J7W01_RS18450 WP_003219701.1 3574093..3574782(-) (degU) [Bacillus subtilis strain YB-04]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTTCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1