Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   J7W01_RS18440 Genome accession   NZ_CP072525
Coordinates   3571653..3573044 (-) Length   463 a.a.
NCBI ID   WP_041850475.1    Uniprot ID   -
Organism   Bacillus subtilis strain YB-04     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3566653..3578044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7W01_RS18405 (J7W01_18405) flgL 3566824..3567720 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  J7W01_RS18410 (J7W01_18410) flgK 3567731..3569254 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  J7W01_RS18415 (J7W01_18415) flgN 3569273..3569755 (-) 483 WP_014481048.1 flagellar protein FlgN -
  J7W01_RS18420 (J7W01_18420) flgM 3569771..3570037 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  J7W01_RS18425 (J7W01_18425) yvyF 3570118..3570537 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  J7W01_RS18430 (J7W01_18430) comFC 3570611..3571333 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  J7W01_RS18435 (J7W01_18435) comFB 3571297..3571593 (-) 297 WP_003227989.1 late competence protein ComFB -
  J7W01_RS18440 (J7W01_18440) comFA 3571653..3573044 (-) 1392 WP_041850475.1 ATP-dependent helicase ComFA Machinery gene
  J7W01_RS18445 (J7W01_18445) fakBA 3573150..3573995 (-) 846 WP_003227986.1 DegV family protein -
  J7W01_RS18450 (J7W01_18450) degU 3574093..3574782 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  J7W01_RS18455 (J7W01_18455) degS 3574865..3576022 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  J7W01_RS18460 (J7W01_18460) yvyE 3576239..3576892 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52485.50 Da        Isoelectric Point: 9.9185

>NTDB_id=553999 J7W01_RS18440 WP_041850475.1 3571653..3573044(-) (comFA) [Bacillus subtilis strain YB-04]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENAPNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTIVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=553999 J7W01_RS18440 WP_041850475.1 3571653..3573044(-) (comFA) [Bacillus subtilis strain YB-04]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGAAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGC
ACCAAACTGGAAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCATCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGTGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

97.84

100

0.978