Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   J7W01_RS10980 Genome accession   NZ_CP072525
Coordinates   2186790..2187410 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain YB-04     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2181790..2192410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7W01_RS10940 (J7W01_10940) ptsA 2182921..2183427 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  J7W01_RS10945 (J7W01_10945) ypqA 2183565..2183984 (+) 420 WP_041849958.1 Hsp20/alpha crystallin family protein -
  J7W01_RS10950 (J7W01_10950) sppG 2184005..2184382 (-) 378 WP_004398696.1 YppG family protein -
  J7W01_RS10955 (J7W01_10955) yppF 2184570..2184758 (+) 189 WP_003230690.1 YppF family protein -
  J7W01_RS10960 (J7W01_10960) yppE 2184797..2185168 (-) 372 WP_021481525.1 YppE family protein -
  J7W01_RS10965 (J7W01_10965) yppD 2185214..2185459 (-) 246 WP_041849959.1 DUF5446 family protein -
  J7W01_RS10970 (J7W01_10970) sspM 2185658..2185762 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  J7W01_RS10975 (J7W01_10975) yppC 2185787..2186749 (-) 963 WP_041849960.1 DUF2515 domain-containing protein -
  J7W01_RS10980 (J7W01_10980) recU 2186790..2187410 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  J7W01_RS10985 (J7W01_10985) ponA 2187432..2190182 (+) 2751 WP_041849961.1 PBP1A family penicillin-binding protein -
  J7W01_RS10990 (J7W01_10990) ypoC 2190257..2190751 (-) 495 WP_041849962.1 YpoC family protein -
  J7W01_RS10995 (J7W01_10995) nth 2190748..2191407 (-) 660 WP_009967580.1 endonuclease III -
  J7W01_RS11000 (J7W01_11000) dnaD 2191426..2192124 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=553968 J7W01_RS10980 WP_004399067.1 2186790..2187410(+) (recU) [Bacillus subtilis strain YB-04]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=553968 J7W01_RS10980 WP_004399067.1 2186790..2187410(+) (recU) [Bacillus subtilis strain YB-04]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1