Detailed information NTG0553967

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: J7W01_RS10180
• Genome accession: NZ_CP072525
• Coordinates: 2055498..2056628 (+)
• Length: 376 a.a.
• NCBI ID: WP_021481447.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain YB-04
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	2054133..2058528	2055498..2056628	within	0

Gene organization within MGE regions

Location: 2054133..2058528

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J7W01_RS10170 (J7W01_10170)	-	2054133..2054507 (+)	375	WP_021481445.1	YoqO family protein	-
J7W01_RS21650 (J7W01_10175)	-	2055219..2055365 (+)	147	Protein_1964	phage holin	-
J7W01_RS10180 (J7W01_10180)	rapC	2055498..2056628 (+)	1131	WP_021481447.1	tetratricopeptide repeat protein	Regulator
J7W01_RS10185 (J7W01_10185)	-	2056618..2056761 (+)	144	WP_153801665.1	hypothetical protein	-
J7W01_RS21465	-	2056915..2057115 (-)	201	WP_021481449.1	hypothetical protein	-
J7W01_RS21470	-	2057337..2057711 (-)	375	Protein_1968	UV damage repair protein UvrX	-
J7W01_RS10195 (J7W01_10195)	-	2057709..2057864 (-)	156	Protein_1969	T7SS effector LXG polymorphic toxin	-
J7W01_RS10200 (J7W01_10200)	yobM	2057965..2058522 (-)	558	WP_038829958.1	SMI1/KNR4 family protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44393.16 Da
• Isoelectric Point: 5.8915

>NTDB_id=553967 J7W01_RS10180 WP_021481447.1 2055498..2056628(+) (rapC) [Bacillus subtilis strain YB-04]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide

• Length: 1131 bp

>NTDB_id=553967 J7W01_RS10180 WP_021481447.1 2055498..2056628(+) (rapC) [Bacillus subtilis strain YB-04]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAGAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (221-287)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	51.064	100	0.511
rapF	Bacillus subtilis subsp. subtilis str. 168	45.119	100	0.455