Detailed information NTG0055396

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: NY40_RS05535
• Genome accession: NZ_AP014523
• Coordinates: 1116681..1117916 (+)
• Length: 411 a.a.
• NCBI ID: WP_041051045.1
• Uniprot ID: -
• Organism: Helicobacter pylori NY40
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1111681..1122916

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NY40_RS05520 (NY40_1118)	-	1112102..1114033 (+)	1932	WP_041051039.1	type IA DNA topoisomerase	-
NY40_RS05525 (NY40_1119)	-	1114163..1115149 (+)	987	WP_041051041.1	type IV secretion system protein	-
NY40_RS05530 (NY40_1120)	-	1115149..1116684 (+)	1536	WP_041051043.1	TrbG/VirB9 family P-type conjugative transfer protein	-
NY40_RS05535 (NY40_1121)	comB10	1116681..1117916 (+)	1236	WP_041051045.1	DNA type IV secretion system protein ComB10	Machinery gene
NY40_RS05540 (NY40_1122)	-	1117986..1118282 (+)	297	WP_041051047.1	hypothetical protein	-
NY40_RS05545 (NY40_1123)	-	1118272..1118535 (+)	264	WP_041051049.1	hypothetical protein	-
NY40_RS05550 (NY40_1124)	-	1118532..1118831 (+)	300	WP_041051051.1	hypothetical protein	-
NY40_RS05555 (NY40_1125)	-	1118831..1119772 (+)	942	WP_041051053.1	CpaF/VirB11 family protein	-
NY40_RS05560 (NY40_1126)	-	1119769..1120224 (+)	456	WP_041051056.1	hypothetical protein	-
NY40_RS05565 (NY40_1127)	-	1120221..1120511 (+)	291	WP_000159810.1	hypothetical protein	-
NY40_RS05570	-	1120512..1121069 (+)	558	WP_041051058.1	hypothetical protein	-
NY40_RS05575 (NY40_1128)	-	1121070..1122797 (+)	1728	WP_041051060.1	type IV secretory system conjugative DNA transfer family protein	-

Sequence

Protein

• Length: 411 a.a.
• Molecular weight: 46415.49 Da
• Isoelectric Point: 10.0578

>NTDB_id=55396 NY40_RS05535 WP_041051045.1 1116681..1117916(+) (comB10) [Helicobacter pylori NY40]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQENKEKAINVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDILKTKPTVASNPFNYNTANEDEKTRLVILASRISSQKETQPPTSIKNSVSHIKSK
EKRELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMRDQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEILAKFF
NEEKEQNNDTK

Nucleotide

• Length: 1236 bp

>NTDB_id=55396 NY40_RS05535 WP_041051045.1 1116681..1117916(+) (comB10) [Helicobacter pylori NY40]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAAACAAAGAAAAAGCTATTAATGTTTCTCAAGGCAAATTCCCCACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGTGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCACTAGTGCAAAAATTACCAAACTTACCAAAAGATATACT
TAAAACCAAACCTACCGTTGCCTCCAATCCTTTCAACTACAATACCGCTAACGAAGATGAAAAAACCCGTTTGGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAACCTCCAACCTCTATAAAAAATAGCGTTTCTCACATAAAATCTAAA
GAAAAACGAGAGCTTGAAAAAGAATACGGCTCTAGCGGGTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTAAGAACGATTACAGCTGACAGGATGATCCCAGCCATTCTGATCACTCCTATTAGCAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGCGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGATTAGAAATTGCTTGGAACAGGATCATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAGGGAGCTGATGTCAAGGGTTATAACGGCATGATAGGCACGCTCCATAACAAAT
ATTGGGAACGCTATGGCATTCCTTTATCCTTAAGCACCTTGTCAAACGGGCTACTCATAGGACTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAGGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGACAAAC
TGGTATCAGCCTAAACAATATTATCGCTCAAATCATGCGAGATCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATCAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAGATCTTAGCGAAATTTTTT
AATGAAGAAAAGGAACAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (192-387)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	46.096	96.594	0.445