Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   J7445_RS08390 Genome accession   NZ_CP072524
Coordinates   1795586..1796245 (+) Length   219 a.a.
NCBI ID   WP_209282981.1    Uniprot ID   -
Organism   Neisseria sicca strain NS20201025     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1790586..1801245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7445_RS08370 (J7445_08370) - 1791036..1792001 (-) 966 WP_209282978.1 IS30 family transposase -
  J7445_RS08375 (J7445_08375) - 1792334..1792654 (+) 321 WP_016686683.1 accessory factor UbiK family protein -
  J7445_RS08380 (J7445_08380) comM 1792668..1794164 (+) 1497 WP_209282979.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J7445_RS08385 (J7445_08385) - 1794466..1795575 (+) 1110 WP_209282980.1 SPOR domain-containing protein -
  J7445_RS08390 (J7445_08390) dsbA1 1795586..1796245 (+) 660 WP_209282981.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  J7445_RS08395 (J7445_08395) - 1796530..1797354 (+) 825 WP_209283370.1 undecaprenyl-diphosphate phosphatase -
  J7445_RS08400 (J7445_08400) - 1797469..1798179 (-) 711 WP_209282982.1 SAM-dependent methyltransferase -
  J7445_RS08405 (J7445_08405) - 1798238..1798828 (-) 591 WP_209282983.1 nucleoside triphosphate pyrophosphatase -
  J7445_RS08410 (J7445_08410) - 1798883..1799383 (+) 501 WP_209282984.1 YceD family protein -
  J7445_RS08415 (J7445_08415) rpmF 1799418..1799597 (+) 180 WP_003744026.1 50S ribosomal protein L32 -
  J7445_RS08420 (J7445_08420) - 1799757..1800284 (+) 528 WP_209282985.1 phosphoribosyltransferase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23992.75 Da        Isoelectric Point: 9.9635

>NTDB_id=553916 J7445_RS08390 WP_209282981.1 1795586..1796245(+) (dsbA1) [Neisseria sicca strain NS20201025]
MKRTIKPAAVLLSLVLAFSASAQAAVEGVDYTVLKKPIPQQDASKIEVLEFFGYFCVHCQNFDPVLLSYSKTFPKDVYLR
TEHVVWMPEMLGLARVAAAVNASGLKYQANPAIFKAVHEQKINLADTATFKSWAAAQKSFDSKKLIAAYDAPASLAAAKK
MQSLTETYRIEGTPDVIVGGKYRVIFSSDWENGQKTIGELINKVRQERSGGKAASKAAR

Nucleotide


Download         Length: 660 bp        

>NTDB_id=553916 J7445_RS08390 WP_209282981.1 1795586..1796245(+) (dsbA1) [Neisseria sicca strain NS20201025]
ATGAAACGGACAATCAAACCGGCAGCCGTACTCCTCAGTCTCGTGCTTGCCTTTTCCGCAAGTGCGCAGGCTGCGGTCGA
AGGCGTGGATTACACGGTTTTGAAAAAACCGATTCCGCAACAAGACGCATCCAAAATCGAAGTTTTGGAATTTTTCGGCT
ATTTCTGCGTACATTGCCAAAACTTTGATCCCGTCTTGCTGTCATACAGCAAAACTTTCCCGAAAGATGTTTACCTGCGT
ACCGAACACGTCGTCTGGATGCCTGAAATGTTGGGCTTGGCGCGGGTTGCTGCAGCGGTTAACGCTTCGGGTTTGAAGTA
TCAGGCAAACCCCGCTATTTTCAAAGCCGTACACGAACAGAAAATCAATTTGGCGGATACCGCCACTTTCAAAAGCTGGG
CGGCGGCACAAAAAAGCTTTGACAGCAAAAAACTGATTGCCGCATACGACGCACCCGCGAGCCTCGCAGCCGCTAAAAAA
ATGCAAAGCCTGACCGAGACTTACCGTATCGAAGGTACGCCGGACGTCATCGTCGGCGGCAAATATCGGGTCATATTCAG
CAGCGATTGGGAGAATGGGCAGAAAACCATAGGCGAGCTGATTAACAAAGTCCGCCAAGAGCGTTCCGGCGGCAAAGCAG
CTTCTAAAGCCGCGCGCTGA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(43-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

56.085

86.301

0.484
  dsbA2 Neisseria meningitidis MC58

57.692

83.105

0.479