Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   J7445_RS03205 Genome accession   NZ_CP072524
Coordinates   675979..676470 (-) Length   163 a.a.
NCBI ID   WP_029609877.1    Uniprot ID   -
Organism   Neisseria sicca strain NS20201025     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 670979..681470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7445_RS03170 (J7445_03170) hemA 671133..672386 (-) 1254 WP_070656670.1 glutamyl-tRNA reductase -
  J7445_RS03175 (J7445_03175) - 672536..673327 (-) 792 WP_019271718.1 polyamine aminopropyltransferase -
  J7445_RS03190 (J7445_03190) panB 673905..674693 (+) 789 WP_070656671.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  J7445_RS03195 (J7445_03195) panC 674865..675701 (+) 837 WP_019271720.1 pantoate--beta-alanine ligase -
  J7445_RS03200 (J7445_03200) - 675846..675953 (+) 108 Protein_622 IS5/IS1182 family transposase -
  J7445_RS03205 (J7445_03205) pilL 675979..676470 (-) 492 WP_029609877.1 PilX family type IV pilin Machinery gene
  J7445_RS03210 (J7445_03210) pilK 676488..677066 (-) 579 WP_070656672.1 pilus assembly protein Machinery gene
  J7445_RS03215 (J7445_03215) - 677045..678019 (-) 975 WP_070656673.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  J7445_RS03220 (J7445_03220) pilV 678019..678696 (-) 678 WP_186805565.1 type IV pilus modification protein PilV -
  J7445_RS03225 (J7445_03225) pilH 678709..679401 (-) 693 WP_070656675.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  J7445_RS03230 (J7445_03230) dnaB 679559..680965 (-) 1407 WP_070491795.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17910.45 Da        Isoelectric Point: 9.1155

>NTDB_id=553902 J7445_RS03205 WP_029609877.1 675979..676470(-) (pilL) [Neisseria sicca strain NS20201025]
MNTSITKSQGFTLVEMLIVVAIIGILSTIAYPSYIHYIERGYQSQAHTELLAINNALKTELVKNPTLKIKDEIEGDTGLV
KAYKAAPEVAAKYDFSGEMKNKDAKNSRAYYLFATPKTGTDYKLSVWMDSLGNAYKCTDAESAKAKSTSKNGNTGCEQVG
YKK

Nucleotide


Download         Length: 492 bp        

>NTDB_id=553902 J7445_RS03205 WP_029609877.1 675979..676470(-) (pilL) [Neisseria sicca strain NS20201025]
ATGAATACGTCTATCACTAAATCTCAAGGGTTTACGCTGGTTGAGATGCTGATTGTCGTTGCTATCATCGGCATCCTCAG
TACCATCGCTTACCCTTCCTATATCCATTACATCGAACGCGGCTATCAATCTCAAGCGCATACGGAACTGCTTGCTATTA
ACAATGCCTTAAAAACCGAATTAGTCAAAAATCCTACCCTTAAAATAAAAGATGAAATTGAGGGAGATACGGGATTGGTT
AAGGCCTACAAAGCTGCGCCCGAGGTCGCTGCCAAATACGACTTCAGCGGTGAAATGAAAAATAAGGACGCTAAAAACAG
CAGGGCTTATTATCTTTTCGCTACTCCGAAAACCGGTACTGATTACAAACTTTCCGTTTGGATGGATAGTTTGGGCAATG
CCTACAAATGTACCGATGCAGAATCTGCTAAAGCCAAGTCAACAAGCAAAAACGGCAATACAGGCTGTGAACAGGTAGGT
TATAAAAAATAG

Domains

Predicted by InterproScan.

Minor type IV pilin, PilX (Pilin_PilX)

(37-162)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

49.383

99.387

0.491
  pilX Neisseria meningitidis 8013

48.75

98.16

0.479