Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   J5Z55_RS26145 Genome accession   NZ_CP072473
Coordinates   5038669..5039031 (-) Length   120 a.a.
NCBI ID   WP_014457774.1    Uniprot ID   A0A8D3WU46
Organism   Priestia aryabhattai strain LAD     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5033669..5044031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5Z55_RS26130 (J5Z55_26130) - 5034150..5036780 (+) 2631 WP_209150770.1 DEAD/DEAH box helicase -
  J5Z55_RS26135 (J5Z55_26135) - 5037078..5038124 (+) 1047 WP_209150771.1 C40 family peptidase -
  J5Z55_RS26140 (J5Z55_26140) - 5038264..5038401 (+) 138 WP_195783343.1 hypothetical protein -
  J5Z55_RS26145 (J5Z55_26145) ssbB 5038669..5039031 (-) 363 WP_014457774.1 single-stranded DNA-binding protein Machinery gene
  J5Z55_RS26150 (J5Z55_26150) - 5039128..5039565 (+) 438 WP_195781577.1 YwpF-like family protein -
  J5Z55_RS26155 (J5Z55_26155) - 5039592..5039771 (-) 180 WP_195781576.1 hypothetical protein -
  J5Z55_RS26160 (J5Z55_26160) - 5040090..5040512 (+) 423 WP_209150772.1 helix-turn-helix transcriptional regulator -
  J5Z55_RS26165 (J5Z55_26165) fabZ 5040541..5040975 (-) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  J5Z55_RS26170 (J5Z55_26170) - 5041059..5041880 (-) 822 WP_209150773.1 flagellar hook-basal body protein -
  J5Z55_RS26175 (J5Z55_26175) - 5041904..5042728 (-) 825 WP_209150774.1 flagellar hook-basal body protein -
  J5Z55_RS26180 (J5Z55_26180) - 5042843..5043844 (-) 1002 WP_209150775.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13412.09 Da        Isoelectric Point: 7.1647

>NTDB_id=553686 J5Z55_RS26145 WP_014457774.1 5038669..5039031(-) (ssbB) [Priestia aryabhattai strain LAD]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSGSSSFDSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=553686 J5Z55_RS26145 WP_014457774.1 5038669..5039031(-) (ssbB) [Priestia aryabhattai strain LAD]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAACCGGAGCTTCGATATACCCATGAAGGGATTGCAGTATC
TACCATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAGGGTGAATATGATGCTGATTTTGTCAACATTACGCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTAGTAGGGCGTGTACAAACGCGC
ACGTTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCTGTTAAGTTTTTAAGTGGAAAGCC
ATCCGGTTCTTCTTCATTTGATTCAAATCAACAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.813

89.167

0.533
  ssb Latilactobacillus sakei subsp. sakei 23K

48.8

100

0.508
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508