Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   IUD23_RS01825 Genome accession   NZ_CP090316
Coordinates   440178..442187 (+) Length   669 a.a.
NCBI ID   WP_038229932.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. morus strain Riv16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 435178..447187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUD23_RS01800 (IUD23_01800) - 436290..436769 (-) 480 WP_004089690.1 peroxiredoxin -
  IUD23_RS01805 (IUD23_01805) - 436816..437391 (-) 576 WP_011098233.1 glycine cleavage system protein R -
  IUD23_RS01810 (IUD23_01810) dapA 437544..438452 (+) 909 WP_004089694.1 4-hydroxy-tetrahydrodipicolinate synthase -
  IUD23_RS01815 (IUD23_01815) - 438472..438978 (+) 507 WP_004089696.1 hypothetical protein -
  IUD23_RS01820 (IUD23_01820) - 439436..440023 (-) 588 WP_011098232.1 Tfp pilus assembly protein FimT/FimU -
  IUD23_RS01825 (IUD23_01825) uvrB 440178..442187 (+) 2010 WP_038229932.1 excinuclease ABC subunit UvrB Machinery gene
  IUD23_RS01835 (IUD23_01835) - 442317..443282 (-) 966 WP_273972629.1 tyrosine-type recombinase/integrase -
  IUD23_RS01840 (IUD23_01840) - 443369..443689 (-) 321 WP_038229933.1 helix-turn-helix domain-containing protein -
  IUD23_RS01845 (IUD23_01845) - 443748..444194 (-) 447 WP_038229935.1 single-stranded DNA-binding protein -
  IUD23_RS01850 (IUD23_01850) - 444261..444851 (-) 591 WP_038229937.1 Bro-N domain-containing protein -
  IUD23_RS01855 (IUD23_01855) - 445205..446848 (-) 1644 WP_038229938.1 lambda-exonuclease family protein -

Sequence

Protein


Download         Length: 669 a.a.        Molecular weight: 75438.03 Da        Isoelectric Point: 5.1893

>NTDB_id=553554 IUD23_RS01825 WP_038229932.1 440178..442187(+) (uvrB) [Xylella fastidiosa subsp. morus strain Riv16]
MTGLFQLVSSYSPSGDQPAAVQKLVTNFHAGIAKQVLLGVTGSGKTYTIANVVEQIQKPTLVMAPNKTLAAQLYGEFKAF
FPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSSINEYIEQMRLAATKALLSRSDVLVVATVSAIYGLGAPEDYLSLRLI
LSLGEHIEQRQLIRHLTELQYTRNELDLVRGSFRVRGEVVDVFPAESEMEALRIELFDGEIESLSLFDPLTGQTVRKLQR
FSVYPKTHYATTRERTLSAVDTIKDELKEYLELLYGRNKLVEAQRLAQRTQFDLEMMAEVGYCNGIENYSRHLTGKAPGE
PPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVEFGFRLPSALDNRPLRFEEWEVRSPRSIYVSATPGSYE
FRESAGEVIELLVRPTGLIDPEIEIRPVATQVDDLISQINACIKLGDRVLVTTLTKRMAENLTEYLSEQGIRIRYLHSEI
DTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAARSVRGRAILYADKVTRS
MRAAIDETERRRQKQKEYNAENGIVPKSVVRPISDILEGARDGVEVKSKGKGRRVDEVPADYGALNQAEIAAQMKVLEQQ
MYQHARDLEFEDAARIRDQIQRLREAGLG

Nucleotide


Download         Length: 2010 bp        

>NTDB_id=553554 IUD23_RS01825 WP_038229932.1 440178..442187(+) (uvrB) [Xylella fastidiosa subsp. morus strain Riv16]
ATGACAGGTTTGTTTCAGCTTGTTTCTTCATACTCTCCTTCTGGGGATCAGCCTGCGGCTGTACAGAAGCTAGTCACTAA
TTTCCATGCTGGCATTGCTAAGCAGGTGTTGCTTGGCGTTACTGGTTCTGGGAAGACTTACACCATCGCTAATGTGGTTG
AGCAGATTCAGAAGCCAACTCTGGTGATGGCGCCAAACAAGACGTTGGCAGCACAGCTTTACGGGGAATTCAAGGCGTTC
TTCCCGCACAATGCGGTGGAATATTTTGTCAGCTACTATGACTACTATCAGCCTGAGGCGTATGTTCCAGCCTCGGACAC
GTTCATTGAAAAGGACAGTTCTATCAATGAATACATTGAACAGATGCGTTTGGCTGCAACGAAGGCTTTGCTGTCACGTT
CTGATGTGTTGGTGGTGGCGACCGTGTCGGCGATTTATGGTTTGGGTGCGCCTGAGGATTATCTTTCGTTACGTTTGATT
TTGTCGCTGGGTGAGCATATTGAGCAGCGGCAATTGATCAGGCATCTCACTGAGTTGCAGTACACTCGTAACGAGTTGGA
TTTGGTGCGTGGTAGTTTCCGTGTACGTGGTGAGGTTGTTGATGTATTCCCGGCTGAGTCAGAGATGGAGGCGCTGCGCA
TTGAGTTGTTTGATGGTGAGATAGAAAGTTTGAGCTTGTTCGATCCGCTTACCGGTCAGACGGTACGTAAGTTGCAACGT
TTTAGTGTTTACCCTAAAACCCACTATGCAACTACGCGTGAACGTACGCTCAGTGCCGTTGATACGATCAAGGATGAGCT
GAAAGAGTATCTAGAACTTCTGTATGGGCGGAATAAGTTGGTTGAGGCGCAACGTTTAGCTCAGCGTACTCAGTTCGACT
TAGAGATGATGGCCGAGGTTGGTTATTGCAATGGTATTGAAAATTACTCTCGTCACTTAACTGGTAAGGCTCCGGGGGAA
CCTCCACCGACGTTGTTCGATTATCTTCCTCCGGATGCGCTACTGGTCATTGATGAGTCGCATGTGACAATTCCGCAGAT
CGGTGCGATGTTCAAGGGGGACCGTTCCCGTAAAGAAACGCTGGTGGAATTTGGTTTCCGTTTACCATCGGCGTTAGACA
ATCGACCGCTTCGCTTTGAGGAATGGGAAGTGCGTTCGCCGCGTAGCATTTACGTCTCGGCAACTCCAGGATCATATGAG
TTCCGCGAGTCCGCGGGTGAAGTCATAGAGTTGCTGGTGCGTCCGACCGGCTTGATTGATCCTGAGATAGAAATCCGTCC
GGTTGCGACGCAGGTGGATGATCTGATTTCCCAGATCAATGCGTGTATCAAGTTAGGTGATCGGGTTTTGGTCACCACGT
TAACTAAGCGTATGGCTGAGAACCTCACTGAATATTTGAGCGAGCAGGGTATCCGGATACGTTATTTGCATTCGGAAATC
GATACGGTAGAACGTGTGGAGATCATCCGTGATTTGCGTCTTGGTAAATTCGATGTGCTGGTTGGTATCAACCTTCTACG
TGAGGGATTGGATATGCCGGAGGTGTCGTTGGTGGCCATTCTTGACGCTGATAAAGAGGGGTTTTTGCGTTCGACCAGTT
CACTGATTCAGACGATTGGTCGTGCCGCACGCAGTGTGCGCGGTAGGGCAATCTTGTATGCCGATAAAGTGACTCGTTCA
ATGCGCGCTGCAATTGATGAAACCGAGCGACGTCGACAAAAGCAGAAGGAATACAATGCTGAGAACGGTATTGTTCCGAA
ATCCGTTGTACGGCCCATTAGCGACATTTTGGAGGGTGCGCGAGATGGTGTCGAGGTGAAGAGCAAGGGGAAGGGGCGCA
GAGTTGATGAGGTTCCCGCTGACTATGGTGCGCTTAATCAAGCTGAGATTGCCGCGCAGATGAAAGTGCTGGAGCAACAG
ATGTACCAGCATGCGCGTGATTTGGAGTTTGAGGATGCGGCGCGTATTCGCGATCAAATTCAGCGGCTTAGGGAGGCTGG
TCTGGGTTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(552-593)

Type III restriction enzyme, res subunit (ResIII)

(16-92)

UvrB interaction domain (UvrB_inter)

(160-249)

Helicase conserved C-terminal domain (Helicase_C)

(441-544)

UvrB/uvrC motif (UVR)

(635-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.183

98.057

0.541
  uvrB Streptococcus pneumoniae R6

55.03

98.057

0.54
  uvrB Streptococcus pneumoniae D39

55.03

98.057

0.54