Detailed information NTG0553553

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: IUD23_RS01660
• Genome accession: NZ_CP090316
• Coordinates: 405979..407124 (-)
• Length: 381 a.a.
• NCBI ID: WP_038229914.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. morus strain Riv16
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 400979..412124

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUD23_RS01645 (IUD23_01645)	-	401362..401925 (-)	564	WP_021358455.1	Sua5/YciO/YrdC/YwlC family protein	-
IUD23_RS01650 (IUD23_01650)	-	402039..404486 (-)	2448	WP_038229912.1	DNA topoisomerase I	-
IUD23_RS01655 (IUD23_01655)	-	405460..405933 (-)	474	WP_004089636.1	DUF494 family protein	-
IUD23_RS01660 (IUD23_01660)	dprA	405979..407124 (-)	1146	WP_038229914.1	DNA-processing protein DprA	Machinery gene
IUD23_RS01665 (IUD23_01665)	-	407215..408369 (-)	1155	WP_038229916.1	LysM peptidoglycan-binding domain-containing protein	-
IUD23_RS01670 (IUD23_01670)	def	408508..409020 (+)	513	WP_038229918.1	peptide deformylase	-
IUD23_RS01675 (IUD23_01675)	fmt	409126..410049 (+)	924	WP_038229920.1	methionyl-tRNA formyltransferase	-
IUD23_RS01680 (IUD23_01680)	rsmB	410046..411341 (+)	1296	WP_140161051.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 40383.20 Da
• Isoelectric Point: 8.3549

>NTDB_id=553553 IUD23_RS01660 WP_038229914.1 405979..407124(-) (dprA) [Xylella fastidiosa subsp. morus strain Riv16]
MASPSHSDSQDTDALLRLVLAGGRSAPRRQLLDYHGTPHAALAAGPNAWRASGCNTMQCTRLVAPDPNAMARIQHWLATP
YHHLLGWHDPDYPPLLRHVPSPPLALFIAGNPILLWHASIAIVGSRQPSAGGLDHSYGFAQALAARGLGIISGMAAGIDA
TAHEAALSIPSGHTVAVLGTGPDVPYPARHKKLHARITTDGAVISEYPPGTQPRAAHFPQRNRIIAGLALGTLVVEAGAR
SGALITARLAAEAGRAVFAVPGSLHNPMTRGCHQLIRQGATLVQDIDQILEDVATLAAPLAHTLRERLDAPSWPVAPLLS
TPNSKDPKYHTLWQALAHDPMSMDSLIDRTGLTAATLSSMLLTLELEGKVVVEHGRYTRTA

Nucleotide

• Length: 1146 bp

>NTDB_id=553553 IUD23_RS01660 WP_038229914.1 405979..407124(-) (dprA) [Xylella fastidiosa subsp. morus strain Riv16]
ATGGCATCCCCATCCCACTCAGACTCCCAAGACACGGACGCGCTGCTACGACTGGTCCTCGCCGGAGGCAGAAGCGCACC
GCGGCGCCAACTACTGGATTACCACGGCACGCCACACGCCGCATTGGCCGCCGGTCCAAATGCTTGGCGCGCCAGTGGCT
GTAACACAATGCAGTGCACCCGCCTAGTTGCTCCCGATCCCAATGCAATGGCACGCATACAACACTGGTTGGCAACGCCT
TACCATCACCTGCTCGGTTGGCACGATCCGGATTACCCGCCATTACTGCGTCATGTCCCTTCGCCACCCTTAGCATTGTT
CATCGCAGGGAATCCAATACTGCTATGGCACGCCAGTATTGCCATCGTCGGCAGCCGCCAGCCCAGTGCCGGCGGCCTTG
ATCATTCCTATGGCTTCGCACAGGCATTAGCGGCACGCGGCCTGGGCATCATCAGCGGAATGGCAGCCGGAATCGACGCT
ACAGCACACGAAGCCGCACTCAGCATACCCAGTGGGCATACGGTCGCAGTCCTTGGTACGGGCCCAGATGTGCCATACCC
AGCACGTCACAAAAAACTGCACGCACGTATCACCACAGACGGAGCGGTCATCAGCGAATATCCACCAGGAACCCAACCAC
GGGCTGCCCACTTTCCACAACGCAACAGGATTATTGCAGGCTTGGCGCTGGGCACACTGGTGGTCGAAGCTGGAGCTCGT
TCCGGCGCACTGATCACCGCTCGACTGGCAGCAGAAGCAGGGCGTGCTGTATTCGCAGTACCAGGATCGCTACACAACCC
TATGACACGCGGCTGCCACCAGTTGATCCGTCAAGGCGCAACACTGGTTCAAGACATAGACCAAATATTGGAGGACGTCG
CTACGCTAGCAGCGCCGTTAGCACACACCTTGCGTGAGCGCCTTGATGCTCCTAGTTGGCCTGTAGCGCCATTATTAAGC
ACACCAAACAGTAAAGACCCTAAATACCACACACTTTGGCAGGCCCTTGCACATGACCCAATGTCCATGGACTCATTAAT
TGACCGTACTGGATTGACGGCAGCCACACTCTCCTCCATGCTTCTAACCTTGGAACTGGAAGGAAAGGTTGTCGTAGAAC
ACGGACGTTATACACGTACCGCTTAG

Domains

Predicted by InterProScan.

• DprA winged helix domain (WHD_DprA) (321-375)

• DNA recombination-mediator protein A (DNA_processg_A) (83-284)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Vibrio cholerae O1 biovar El Tor strain E7946	41.176	89.239	0.367
dprA	Vibrio cholerae strain A1552	41.176	89.239	0.367
dprA	Acinetobacter baumannii D1279779	37.602	96.325	0.362