Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LV497_RS07085 Genome accession   NZ_CP090007
Coordinates   1535209..1536168 (+) Length   319 a.a.
NCBI ID   WP_245084340.1    Uniprot ID   -
Organism   Streptococcus salivarius strain SALI-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1530209..1541168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV497_RS07075 (LV497_07075) - 1530819..1531559 (-) 741 WP_245084334.1 CPBP family intramembrane glutamic endopeptidase -
  LV497_RS07080 (LV497_07080) - 1531970..1533907 (+) 1938 WP_245084337.1 GbpC/Spa domain-containing protein -
  LV497_RS07085 (LV497_07085) coiA 1535209..1536168 (+) 960 WP_245084340.1 competence protein CoiA Machinery gene
  LV497_RS07090 (LV497_07090) pepF 1536179..1537984 (+) 1806 WP_037599540.1 oligoendopeptidase F Regulator
  LV497_RS07095 (LV497_07095) - 1538198..1539418 (+) 1221 WP_064523785.1 OFA family MFS transporter -
  LV497_RS07100 (LV497_07100) - 1539490..1540197 (+) 708 WP_014633986.1 O-methyltransferase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 37847.69 Da        Isoelectric Point: 9.4880

>NTDB_id=553055 LV497_RS07085 WP_245084340.1 1535209..1536168(+) (coiA) [Streptococcus salivarius strain SALI-10]
MLIAKNQEGKLVSALETSLQRKESYSCPGCQGVVLLKHGQVMCPHFAHKSLQDCQFFSENESAQHLSLKAALYKSLVNHG
EKVSIEKVLSEMGQIADLFVGDSLALEVQCSRLSQQRLRERTCAYHQAGYEVRWLLGEELWLNGRLTDLQRDFLYFTAKI
GFHLWELDWKREEIRLKYLIYEDIFGKVYYLTKAWPLTENLMTVLRFPYQAEQVETYQVTQRKKVSHVIQRELIGKNPRW
MRRQEKAYLKGMNLLCLSDQDFFPQVRFPESKQGFVQIRQSLEGFEKLFMQYYRKRHFSYRQTLYSPTFYAKIVKNRYN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=553055 LV497_RS07085 WP_245084340.1 1535209..1536168(+) (coiA) [Streptococcus salivarius strain SALI-10]
ATGTTAATTGCAAAAAATCAGGAGGGGAAGCTCGTTTCAGCTCTAGAAACCAGTTTGCAACGTAAGGAATCCTATAGCTG
TCCTGGTTGCCAGGGAGTTGTCCTTCTGAAACATGGCCAGGTAATGTGTCCACATTTTGCTCATAAGTCTTTGCAAGATT
GTCAGTTCTTCTCGGAGAATGAATCGGCCCAACATTTATCCCTTAAGGCAGCTTTGTATAAATCTTTGGTTAATCATGGT
GAAAAAGTAAGTATTGAAAAGGTTTTGTCTGAGATGGGGCAAATTGCAGATTTATTTGTTGGCGATTCCCTGGCTCTAGA
AGTTCAGTGTTCTCGGTTATCTCAGCAACGTTTGAGAGAGAGGACATGTGCCTATCACCAAGCAGGTTACGAAGTGCGTT
GGCTTTTGGGTGAGGAACTCTGGTTGAATGGACGTTTAACAGACCTACAGCGGGACTTTCTCTATTTTACGGCTAAGATT
GGATTTCACCTATGGGAGCTTGATTGGAAGCGTGAGGAAATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAA
AGTCTATTATTTAACTAAGGCTTGGCCGTTAACCGAAAATCTCATGACAGTTTTACGTTTTCCTTATCAAGCAGAGCAGG
TTGAGACTTATCAAGTAACTCAGCGAAAGAAGGTCTCACATGTGATTCAACGAGAATTAATTGGGAAAAATCCAAGGTGG
ATGAGAAGGCAGGAAAAAGCCTATCTTAAGGGAATGAATTTGTTATGCCTGTCTGATCAGGATTTTTTTCCACAAGTGAG
ATTTCCAGAATCTAAGCAGGGTTTTGTACAAATTAGACAGTCACTTGAAGGTTTTGAAAAGCTTTTTATGCAATATTATC
GAAAAAGGCATTTTTCTTATCGACAAACTCTCTACTCTCCCACCTTTTATGCTAAAATAGTAAAGAATAGATACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

44.373

97.492

0.433
  coiA Streptococcus pneumoniae Rx1

44.373

97.492

0.433
  coiA Streptococcus pneumoniae D39

44.373

97.492

0.433
  coiA Streptococcus pneumoniae R6

44.373

97.492

0.433
  coiA Streptococcus mitis NCTC 12261

44.373

97.492

0.433