Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LV497_RS07090 Genome accession   NZ_CP090007
Coordinates   1536179..1537984 (+) Length   601 a.a.
NCBI ID   WP_037599540.1    Uniprot ID   -
Organism   Streptococcus salivarius strain SALI-10     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1531179..1542984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV497_RS07080 (LV497_07080) - 1531970..1533907 (+) 1938 WP_245084337.1 GbpC/Spa domain-containing protein -
  LV497_RS07085 (LV497_07085) coiA 1535209..1536168 (+) 960 WP_245084340.1 competence protein CoiA Machinery gene
  LV497_RS07090 (LV497_07090) pepF 1536179..1537984 (+) 1806 WP_037599540.1 oligoendopeptidase F Regulator
  LV497_RS07095 (LV497_07095) - 1538198..1539418 (+) 1221 WP_064523785.1 OFA family MFS transporter -
  LV497_RS07100 (LV497_07100) - 1539490..1540197 (+) 708 WP_014633986.1 O-methyltransferase -
  LV497_RS07105 (LV497_07105) - 1540259..1541401 (+) 1143 WP_245084343.1 peptidyl-prolyl cis-trans isomerase -
  LV497_RS07110 (LV497_07110) - 1541740..1542225 (+) 486 WP_037611989.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69040.08 Da        Isoelectric Point: 4.5615

>NTDB_id=553056 LV497_RS07090 WP_037599540.1 1536179..1537984(+) (pepF) [Streptococcus salivarius strain SALI-10]
MSDNRAHLEEKYTWDLTTIFATDADWETEYESTVQDLKKASAYAGHLLDSAKNLLEATELYMSLMRRLEKIYVYASMKND
QDTTVGLYQEYQAKASNLYSQLSEAFAYFEPEFMALDDKKLAEFKEQEPGLGLYDHYFERLLANKDHVLSQEAEELLAAA
GDIFNGPTDTFNVLDNADILFPWVSDGQGDVVELTHGNFITLMESKDRDIRKGAYEAMYGTYEQFQHTYAQTLQGVVKVH
NYQAKVRHYNSARHAALAANFIPESVYDSLLESVNKHLPLLHRYLDLRKKVLGLDELKMYDVYTPLSETETALTYEESLK
KAEEVLAIFGEEYSKGVHAAFTERWIDVHPNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRQT
QPYVYGDYPIFLAEIASTTNENILTETLLKEVKDDKTRFAILNHYLDGFKGTVFRQTQFAEFEHAIHEADASGQILTADF
MNKLYADLNEKYYNLKAEDNYEIQFEWERIPHFYMNYYVYQYATGFAAASYLAEKIVHGTEEDKEAYLTYLKAGSSDYPL
EVIKKAGVDMTNTDYLDAAFKVFEDRLVELEALVEKGVHLS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=553056 LV497_RS07090 WP_037599540.1 1536179..1537984(+) (pepF) [Streptococcus salivarius strain SALI-10]
ATGTCAGACAATCGTGCTCATTTAGAAGAGAAATACACATGGGATTTGACGACCATTTTTGCGACAGATGCAGATTGGGA
GACTGAGTATGAAAGCACTGTTCAGGATTTGAAGAAGGCTAGTGCTTATGCAGGTCATCTCTTAGATTCTGCTAAGAACT
TGCTTGAGGCAACAGAACTTTATATGAGCCTTATGCGTCGCTTGGAGAAAATCTATGTCTATGCGTCAATGAAAAATGAC
CAAGACACAACAGTAGGGCTTTACCAAGAGTACCAAGCTAAGGCCTCAAACCTTTACTCACAGTTGAGTGAAGCCTTTGC
ATACTTTGAGCCTGAATTTATGGCCTTGGATGATAAGAAATTAGCTGAGTTTAAAGAACAAGAGCCAGGTCTTGGACTTT
ATGACCACTATTTCGAACGCCTTTTGGCAAACAAGGACCACGTTCTTTCTCAAGAAGCTGAGGAGCTCTTGGCAGCAGCA
GGTGATATCTTCAACGGTCCAACGGATACCTTCAATGTCTTGGATAATGCTGATATCCTCTTCCCATGGGTATCAGATGG
TCAAGGGGATGTGGTTGAGTTGACACATGGTAACTTTATCACCCTCATGGAATCTAAGGACCGTGACATTCGTAAGGGAG
CTTATGAAGCGATGTATGGGACCTACGAGCAGTTCCAACATACTTATGCACAAACACTCCAAGGCGTTGTCAAGGTTCAC
AATTACCAAGCCAAAGTTCGTCACTATAATTCAGCACGTCATGCAGCACTTGCAGCTAACTTTATTCCAGAAAGTGTTTA
TGATTCACTCTTGGAATCAGTGAACAAGCATTTGCCACTTTTGCATCGTTACCTTGATTTGCGTAAGAAGGTCTTGGGGC
TTGACGAGCTTAAGATGTATGATGTCTATACACCACTTTCTGAGACTGAAACTGCTCTTACTTATGAAGAATCCCTCAAG
AAAGCAGAAGAAGTCTTGGCAATCTTTGGTGAAGAGTATAGTAAAGGGGTTCATGCAGCCTTTACGGAACGTTGGATTGA
CGTTCACCCTAACAAAGGAAAACGTTCAGGTGCTTACTCAGGTGGTGCCTATGATACCAATGCTTTCATGCTTTTGAACT
GGCAAGATACTTTGGACAATCTCTTTACCTTGGTTCACGAGACTGGTCATAGTTTGCATTCAACGTTCACACGTCAGACT
CAACCATATGTTTACGGAGATTACCCAATCTTCTTGGCGGAAATTGCGTCTACAACCAATGAAAATATCTTGACAGAAAC
GCTTCTTAAAGAGGTCAAAGATGACAAGACACGTTTTGCTATTCTTAACCACTATTTGGATGGTTTCAAGGGAACTGTCT
TCCGTCAAACACAATTTGCAGAGTTTGAACATGCTATCCATGAAGCAGATGCATCTGGTCAAATCTTGACAGCCGACTTC
ATGAATAAGCTTTACGCAGATCTCAATGAGAAATACTATAATCTCAAAGCTGAAGATAACTACGAAATTCAGTTTGAGTG
GGAACGTATTCCGCATTTTTACATGAATTACTATGTCTACCAATACGCTACAGGGTTTGCGGCAGCAAGCTACTTGGCTG
AAAAAATTGTTCATGGTACTGAAGAAGATAAGGAAGCTTACCTTACTTACCTTAAGGCGGGAAGCTCAGACTATCCTTTG
GAAGTCATCAAGAAAGCTGGTGTTGATATGACCAATACCGACTACTTGGATGCTGCCTTCAAAGTTTTTGAAGACCGTCT
CGTTGAGTTGGAAGCCTTGGTTGAAAAAGGTGTGCACCTTTCTTAA

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

99.667

100

0.997