Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   J7T60_RS08630 Genome accession   NZ_CP072436
Coordinates   1645729..1646685 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus strain S24735     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1640729..1651685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T60_RS08600 (J7T60_08495) proC 1641283..1642053 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  J7T60_RS08605 (J7T60_08500) - 1642083..1642745 (-) 663 WP_011227583.1 CPBP family intramembrane glutamic endopeptidase -
  J7T60_RS08610 (J7T60_08505) - 1642848..1643141 (-) 294 WP_232085688.1 hypothetical protein -
  J7T60_RS08615 - 1643366..1643791 (-) 426 WP_111679733.1 CPBP family intramembrane glutamic endopeptidase -
  J7T60_RS08620 (J7T60_08515) - 1644034..1644231 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  J7T60_RS08625 (J7T60_08520) - 1644480..1645673 (-) 1194 WP_014608740.1 acetate kinase -
  J7T60_RS08630 (J7T60_08525) comYH 1645729..1646685 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  J7T60_RS08635 (J7T60_08530) comGG 1646730..1647047 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  J7T60_RS08640 (J7T60_08535) comYF 1647025..1647462 (-) 438 WP_372433445.1 competence type IV pilus minor pilin ComGF Machinery gene
  J7T60_RS08645 (J7T60_08540) comGE 1647446..1647739 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  J7T60_RS08650 (J7T60_08545) comYD 1647711..1648139 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  J7T60_RS08655 (J7T60_08550) comYC 1648099..1648425 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  J7T60_RS08660 (J7T60_08555) comYB 1648422..1649522 (-) 1101 WP_372433576.1 competence type IV pilus assembly protein ComGB Machinery gene
  J7T60_RS08665 (J7T60_08560) comYA 1649404..1650345 (-) 942 WP_180478282.1 competence type IV pilus ATPase ComGA Machinery gene
  J7T60_RS08670 (J7T60_08565) - 1650426..1650788 (-) 363 WP_372433446.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=553008 J7T60_RS08630 WP_011226622.1 1645729..1646685(-) (comYH) [Streptococcus thermophilus strain S24735]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=553008 J7T60_RS08630 WP_011226622.1 1645729..1646685(-) (comYH) [Streptococcus thermophilus strain S24735]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682