Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LVO07_RS07390 Genome accession   NZ_CP089930
Coordinates   1535941..1537479 (-) Length   512 a.a.
NCBI ID   WP_001040606.1    Uniprot ID   -
Organism   Escherichia coli strain E69     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1530941..1542479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVO07_RS07365 (LVO07_07365) ataR 1531328..1531594 (-) 267 WP_225761998.1 type II toxin-antitoxin system antitoxin AtaR -
  LVO07_RS07370 (LVO07_07370) livJ 1531745..1532848 (-) 1104 WP_001022009.1 branched chain amino acid ABC transporter substrate-binding protein LivJ -
  LVO07_RS07375 (LVO07_07375) rpoH 1533120..1533974 (-) 855 WP_000130220.1 RNA polymerase sigma factor RpoH -
  LVO07_RS07380 (LVO07_07380) ftsX 1534219..1535277 (-) 1059 WP_001042014.1 permease-like cell division protein FtsX -
  LVO07_RS07385 (LVO07_07385) ftsE 1535270..1535938 (-) 669 WP_000617723.1 cell division ATP-binding protein FtsE -
  LVO07_RS07390 (LVO07_07390) pilA 1535941..1537479 (-) 1539 WP_001040606.1 signal recognition particle-docking protein FtsY Machinery gene
  LVO07_RS07395 (LVO07_07395) rsmD 1537629..1538225 (+) 597 WP_000743185.1 16S rRNA (guanine(966)-N(2))-methyltransferase -
  LVO07_RS07400 (LVO07_07400) yhhL 1538215..1538484 (+) 270 WP_001517271.1 DUF1145 family protein -
  LVO07_RS07405 (LVO07_07405) yhhM 1538487..1538846 (-) 360 WP_000042879.1 DUF2500 domain-containing protein -
  LVO07_RS07410 (LVO07_07410) yhhN 1538988..1539614 (+) 627 WP_000964714.1 lysoplasmalogenase -
  LVO07_RS07415 (LVO07_07415) zntA 1539688..1541886 (+) 2199 WP_222680863.1 Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA -
  LVO07_RS07420 (LVO07_07420) tusA 1541993..1542238 (-) 246 WP_000130621.1 sulfurtransferase TusA -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 56215.32 Da        Isoelectric Point: 4.1352

>NTDB_id=552573 LVO07_RS07390 WP_001040606.1 1535941..1537479(-) (pilA) [Escherichia coli strain E69]
MAKEKKRGFFSWLGFGQKEQTPEKETETQNEQPVVEEIVQAQEPAKVAEQPVEEQPQAHTEAEAETFAADVVEVTEQVVE
SEKAQPEAVVEPEVIAEPEPIVEETPASVVEPEVTPEPVAIEREELPLPEDVKVEEVSPEEWQAEAETVEIVEAAEEQAA
KEEITDEELEAQALAAEAAEEAVMVVPPAEEDQPVEEVAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDD
DLFEELEEQLLIADVGVETTRKIITNLTEGATRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKTPFVILMVGVNGVG
KTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNVDVLIADTAG
RLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFG
IPIRYIGVGERIEDLRPFKADDFIEALFARED

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=552573 LVO07_RS07390 WP_001040606.1 1535941..1537479(-) (pilA) [Escherichia coli strain E69]
ATGGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGGCTGGGCTTTGGTCAAAAAGAGCAGACCCCGGAAAAAGAGACAGA
AACCCAAAACGAACAACCGGTTGTAGAAGAAATCGTCCAGGCGCAAGAGCCTGCGAAAGTTGCTGAACAACCCGTTGAAG
AACAGCCGCAGGCGCATACTGAAGCTGAGGCGGAAACTTTTGCTGCCGACGTTGTGGAAGTCACTGAACAGGTTGTTGAA
AGTGAAAAAGCGCAACCTGAAGCGGTTGTCGAGCCGGAAGTTATTGCAGAACCGGAGCCGATAGTTGAAGAAACGCCAGC
GTCGGTAGTTGAACCTGAAGTCACGCCAGAGCCAGTGGCTATCGAGCGTGAAGAGCTGCCGCTGCCAGAAGACGTTAAAG
TCGAAGAAGTTTCGCCAGAAGAGTGGCAGGCCGAAGCGGAAACCGTGGAGATTGTCGAAGCGGCGGAAGAACAAGCAGCG
AAAGAAGAAATCACCGACGAAGAGCTGGAAGCACAGGCGCTGGCCGCTGAAGCGGCAGAAGAGGCGGTGATGGTCGTTCC
TCCGGCAGAAGAAGATCAGCCGGTGGAAGAGGTAGCCCAGGAGCAGGAAAAACCAACCAAAGAAGGTTTCTTCGCTCGCC
TGAAACGCAGCCTGCTGAAAACTAAAGAAAACCTCGGTTCCGGATTTATCAGCCTGTTCCGTGGTAAAAAAATCGACGAT
GATCTGTTTGAAGAGCTGGAAGAGCAATTGCTCATCGCCGATGTGGGCGTGGAAACCACGCGCAAAATCATCACCAATCT
GACTGAAGGCGCGACCCGCAAACAGCTTCGCGATGCTGAGGCGCTCTACGGTCTGCTGAAAGAAGAGATGGGTGAGATTC
TGGCGAAGGTCGATGAACCGCTGAATGTCGAAGGTAAAACACCGTTCGTGATTCTGATGGTAGGCGTCAATGGCGTGGGT
AAAACCACGACTATCGGTAAGCTGGCGCGTCAGTTTGAACAACAAGGTAAATCGGTCATGCTGGCGGCGGGCGATACTTT
CCGTGCAGCAGCGGTTGAACAGCTTCAGGTCTGGGGTCAGCGCAACAATATTCCGGTGATTGCCCAGCATACCGGCGCGG
ATTCCGCCTCAGTTATCTTCGACGCTATTCAGGCCGCTAAGGCGCGTAATGTTGATGTCCTGATTGCCGATACAGCCGGA
CGCTTGCAGAACAAATCGCACCTGATGGAAGAGCTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCC
GCATGAAGTTATGCTGACTATCGATGCCAGCACCGGGCAGAATGCGGTAAGCCAGGCCAAACTGTTCCATGAAGCCGTCG
GCTTAACCGGCATCACGTTAACTAAACTGGACGGCACGGCGAAAGGCGGAGTAATTTTCTCGGTGGCTGACCAGTTTGGT
ATTCCTATTCGCTATATTGGTGTCGGCGAACGTATTGAGGATTTGCGTCCGTTTAAGGCGGACGACTTTATAGAGGCACT
TTTTGCCCGAGAGGATTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(225-290)

SRP54-type protein, GTPase domain (SRP54)

(308-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.33

80.469

0.381