Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   J6B58_RS02715 Genome accession   NZ_CP072398
Coordinates   571945..572685 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain KSK2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 566945..577685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6B58_RS02700 (J6B58_02700) ponA 567531..570086 (-) 2556 WP_000736670.1 penicillin-binding protein PBP1a -
  J6B58_RS02705 (J6B58_02705) pilM 570249..571307 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  J6B58_RS02710 (J6B58_02710) pilN 571307..571948 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  J6B58_RS02715 (J6B58_02715) pilO 571945..572685 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  J6B58_RS02720 (J6B58_02720) pilP 572696..573223 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  J6B58_RS02725 (J6B58_02725) pilQ 573291..575456 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  J6B58_RS02730 (J6B58_02730) aroK 575468..576037 (+) 570 WP_000643712.1 shikimate kinase AroK -
  J6B58_RS02735 (J6B58_02735) aroB 576066..577148 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=552335 J6B58_RS02715 WP_000076101.1 571945..572685(+) (pilO) [Acinetobacter baumannii strain KSK2]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=552335 J6B58_RS02715 WP_000076101.1 571945..572685(+) (pilO) [Acinetobacter baumannii strain KSK2]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683